4.7 Article

Potential Energy Surface-Based Automatic Deduction of Conformational Transition Networks and Its Application on Quantum Mechanical Landscapes of D-Glucose Conformers

期刊

JOURNAL OF CHEMICAL THEORY AND COMPUTATION
卷 12, 期 11, 页码 5293-5308

出版社

AMER CHEMICAL SOC
DOI: 10.1021/acs.jctc.6b00439

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资金

  1. Data Centric Science Research Commons Project of the Research Organization of Information and Systems (ROIS), Japan
  2. Japan Society for the Promotion of Science [25540017]
  3. CREST, Japan Science and Technology Agency (JST)
  4. Grants-in-Aid for Scientific Research [25540017] Funding Source: KAKEN

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This paper describes our approach that is built upon the potential energy surface (PES)-based conformational analysis. This approach automatically deduces a conformational transition network, called a conformational reaction route map (r-map), by using the Scaled Hypersphere Search of the Anharmonic Downward Distortion Following method (SHS-ADDF). The PES-based conformational search has been achieved by using large ADDF, which makes it possible to trace only low transition state (TS) barriers while restraining bond lengths and structures with high free energy. It automatically performs sampling the minima and TS structures by simply taking into account the mathematical feature of PES without requiring any a priori specification of variable internal coordinates. An obtained r-map is composed of equilibrium (EQ) conformers connected by reaction routes via TS conformers, where all of the reaction routes are already confirmed during the process of the deduction using the intrinsic reaction coordinate (IRC) method. The postcalculation analysis of the deduced r-map is interactively carried out using the RMapViewer software we have developed. This paper presents computational details of the PES-based conformational analysis and its application to D-glucose. The calculations have been performed for an isolated glucose molecule in the gas phase at the RHF/6-31G level. The obtained conformational r-map for alpha-D-glucose is composed of 201 EQ and 435 TS conformers and that for beta-D-glucose is composed of 202 EQ and 371 TS conformers. For the postcalculation analysis of the conformational r-maps by using the RMapViewer software program we have found multiple minimum energy paths (MEPs) between global minima of C-1(4) and C-4(1) chair conformations. The analysis using RMapViewer allows us to confirm the thermodynamic and kinetic predominance of C-4(1) conformations; that is, the potential energy of the global minimum of C-4(1) is lower than that of C-1(4) (thermodynamic predominance) and that the highest energy of those of all the TS structures along a route from C-4(1) to C-1(4) is lower than that of C-1(4) to C-4(1) (kinetic predominance).

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