4.6 Article

Genomic Investigation Reveals a Community Typhoid Outbreak Caused by Contaminated Drinking Water in China, 2016

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Infectious Diseases

Antimicrobial Resistance Profiles and Genetic Typing of Salmonella Serovars from Chicken Embryos in China

Yaohui Xu et al.

Summary: The study revealed that Salmonella strains isolated from chicken embryos in Henan province exhibited high resistance to ampicillin (66.67%) and sulfisoxazole (66.67%), with 67.5% of strains being multidrug resistant and 21.67% confirmed as ESBLs positive. Resistance was found to be serovar-dependent, with ESBLs positive strains showing more multi-resistance than ESBLs negative strains.

ANTIBIOTICS-BASEL (2021)

Article Food Science & Technology

Impacts of Microbial Food Safety in China and Beyond

Min Yue et al.

FOODBORNE PATHOGENS AND DISEASE (2021)

Article Microbiology

Genomic Investigation of Salmonella Isolates Recovered From a Pig Slaughtering Process in Hangzhou, China

Beibei Wu et al.

Summary: This study conducted in Hangzhou, Zhejiang Province, China, revealed the presence of multidrug-resistant Salmonella in the pig slaughtering process, with the dehairing area and splitting area being the most contaminated areas. These findings emphasize the importance of enhancing management practices to control critical points, while also highlighting the urgent need for implementing whole genome sequencing to monitor the emergence of virulent and multidrug-resistant clones.

FRONTIERS IN MICROBIOLOGY (2021)

Article Biochemistry & Molecular Biology

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Biochemistry & Molecular Biology

Epidemiological and Genomic Characterization of Campylobacter jejuni Isolates from a Foodborne Outbreak at Hangzhou, China

Hua Yu et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Infectious Diseases

ResFinder 4.0 for predictions of phenotypes from genotypes

Valeria Bortolaia et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2020)

Article Biotechnology & Applied Microbiology

Genomic Characterization of mcr-1-carrying Salmonella enterica Serovar 4,[5],12:i:- ST 34 Clone Isolated From Pigs in China

Mohammed Elbediwi et al.

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2020)

Article Genetics & Heredity

Genomic characterization of Salmonella Uzaramo for human invasive infection

Xuebin Xu et al.

MICROBIAL GENOMICS (2020)

Review Immunology

Global Typhoid Fever Incidence: A Systematic Review and Meta-analysis

Christian S. Marchello et al.

CLINICAL INFECTIOUS DISEASES (2019)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

VFDB 2019: a comparative pathogenomic platform with an interactive web interface

Bo Liu et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Food Science & Technology

A Meta-Analysis of Major Foodborne Pathogens in Chinese Food Commodities Between 2006 and 2016

Narayan Paudyal et al.

FOODBORNE PATHOGENS AND DISEASE (2018)

Article Biochemistry & Molecular Biology

NCBI prokaryotic genome annotation pipeline

Tatiana Tatusova et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid

Vanessa K. Wong et al.

NATURE COMMUNICATIONS (2016)

Article Immunology

The emergence and outbreak of multidrug-resistant typhoid fever in China

Meiying Yan et al.

EMERGING MICROBES & INFECTIONS (2016)

Article Microbiology

In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

Alessandra Carattoli et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

Todd J. Treangen et al.

GENOME BIOLOGY (2014)

Review Microbiology

Food and human gut as reservoirs of transferable antibiotic resistance encoding genes

Jean-Marc Rolain

FRONTIERS IN MICROBIOLOGY (2013)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Public, Environmental & Occupational Health

Typhoid fever and paratyphoid fever: Systematic review to estimate global morbidity and mortality for 2010

Geoffrey C. Buckle et al.

Journal of Global Health (2012)

Article Biotechnology & Applied Microbiology

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

Nabil-Fareed Alikhan et al.

BMC GENOMICS (2011)

Article Microbiology

Commensal Escherichia coli of healthy humans: a reservoir for antibiotic-resistance determinants

Jannine K. Bailey et al.

JOURNAL OF MEDICAL MICROBIOLOGY (2010)

Article Multidisciplinary Sciences

FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments

Morgan N. Price et al.

PLOS ONE (2010)

Review Cell Biology

Salmonella, the host and disease:: a brief review

Bryan Coburn et al.

IMMUNOLOGY AND CELL BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Escherichia coli: the best biological drinking water indicator for public health protection

SC Edberg et al.

JOURNAL OF APPLIED MICROBIOLOGY (2000)