相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。CRISPR-based RNA-binding protein mapping in live cells
Baiwen Chen et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2021)
RNA-binding proteins in human genetic disease
Fatima Gebauer et al.
NATURE REVIEWS GENETICS (2021)
CBRPP: a new RNA-centric method to study RNA-protein interactions
Yunfei Li et al.
RNA BIOLOGY (2021)
High-resolution structure of cas13b and biochemical characterization of RNA targeting and cleavage (vol 26, 3741.e1, 2019)
Ian M. Slaymaker et al.
CELL REPORTS (2021)
RNA Proximity Labeling: A New Detection Tool for RNA-Protein Interactions
Ronja Weissinger et al.
MOLECULES (2021)
Programmable RNA editing with compact CRISPR-Cas13 systems from uncultivated microbes
Chunlong Xu et al.
NATURE METHODS (2021)
In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation
Xianzhi Lin et al.
RNA BIOLOGY (2021)
Programmable System of Cas13-Mediated RNA Modification and Its Biological and Biomedical Applications
Tian Tang et al.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2021)
Targeting RNA-binding proteins in acute and chronic leukemia
Irina A. Elcheva et al.
LEUKEMIA (2021)
Capturing RNA-protein interaction via CRUIS
Ziheng Zhang et al.
NUCLEIC ACIDS RESEARCH (2020)
Single-Molecule Imaging of Telomerase RNA Reveals a Recruitment-Retention Model for Telomere Elongation
Hadrien Laprade et al.
MOLECULAR CELL (2020)
CRISPR-assisted detection of RNA-protein interactions in living cells
Wenkai Yi et al.
NATURE METHODS (2020)
RNA-protein interaction mapping via MS2-or Cas13-based APEX targeting
Shuo Han et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Illuminating RNA Biology: Tools for Imaging RNA in Live Mammalian Cells
Esther Braselmann et al.
CELL CHEMICAL BIOLOGY (2020)
Molecular Mechanisms of RNA Targeting by Cas13-containing Type VI CRISPR-Cas Systems
Mitchell R. O'Connell
JOURNAL OF MOLECULAR BIOLOGY (2019)
Methods to study RNA-protein interactions
Muthukumar Ramanathan et al.
NATURE METHODS (2019)
β-Actin mRNA interactome mapping by proximity biotinylation
Joyita Mukherjee et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
A cytosine deaminase for programmable single-base RNA editing
Omar O. Abudayyeh et al.
SCIENCE (2019)
CRISPR-mediated live imaging of genome editing and transcription
Haifeng Wang et al.
SCIENCE (2019)
Dynamic Imaging of RNA in Living Cells by CRISPR-Cas13 Systems
Liang-Zhong Yang et al.
MOLECULAR CELL (2019)
An improved MS2 system for accurate reporting of the mRNA life cycle
Evelina Tutucci et al.
NATURE METHODS (2018)
Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors
Silvana Konermann et al.
CELL (2018)
Cas13d Is a Compact RNA-Targeting Type VI CRISPR Effector Positively Modulated by a WYL-Domain-Containing Accessory Protein
Winston X. Yan et al.
MOLECULAR CELL (2018)
Advances in CLIP Technologies for Studies of Protein-RNA Interactions
Flora C. Y. Lee et al.
MOLECULAR CELL (2018)
RNA-protein interaction detection in living cells
Muthukumar Ramanathan et al.
NATURE METHODS (2018)
Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d
Cheng Zhang et al.
CELL (2018)
The NORAD lncRNA assembles a topoisomerase complex critical for genome stability
Mathias Munschauer et al.
NATURE (2018)
A proximity-tagging system to identify membrane protein-protein interactions
Qiang Liu et al.
NATURE METHODS (2018)
Stem-loop RNA labeling can affect nuclear and cytoplasmic mRNA processing
Stephanie Heinrich et al.
RNA (2017)
A versatile tandem RNA isolation procedure to capture in vivo formed mRNA-protein complexes
Ana M. Matia-Gonzalez et al.
METHODS (2017)
The Revolution Continues: Newly Discovered Systems Expand the CRISPR-Cas Toolkit
Karthik Murugan et al.
MOLECULAR CELL (2017)
Cas13b Is a Type VI-B CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx27 and Csx28
Aaron A. Smargon et al.
MOLECULAR CELL (2017)
RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes
Alexandra East-Seletsky et al.
MOLECULAR CELL (2017)
RNA targeting with CRISPR-Cas13
Omar O. Abudayyeh et al.
NATURE (2017)
Diversity and evolution of class 2 CRISPR-Cas systems
Sergey Shmakov et al.
NATURE REVIEWS MICROBIOLOGY (2017)
Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme
Gavin J. Knott et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
RNA editing with CRISPR-Cas13
David B. T. Cox et al.
SCIENCE (2017)
CRISPR-Cas: Adapting to change
Simon A. Jackson et al.
SCIENCE (2017)
Type III CRISPR-Cas Immunity: Major Differences Brushed Aside
Gintautas Tamulaitis et al.
TRENDS IN MICROBIOLOGY (2017)
Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme
Gavin J. Knott et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
The Molecular Architecture for RNA-Guided RNA Cleavage by Cas13a
Liang Liu et al.
CELL (2017)
RNA-Binding Proteins in Cancer: Old Players and New Actors
Bruno Pereira et al.
TRENDS IN CANCER (2017)
Diversity, classification and evolution of CRISPR-Cas systems
Eugene V. Koonin et al.
CURRENT OPINION IN MICROBIOLOGY (2017)
Two Distant Catalytic Sites Are Responsible for C2c2 RNase Activities
Liang Liu et al.
CELL (2017)
ChIP bias as a function of cross-linking time
Laura Baranello et al.
CHROMOSOME RESEARCH (2016)
Imaging Dendrimer-Grafted Graphene Oxide Mediated Anti-miR-21 Delivery With an Activatable Luciferase Reporter
Fu Wang et al.
ACS APPLIED MATERIALS & INTERFACES (2016)
Fluorescence Lifetime Imaging of Nanoflares for mRNA Detection in Living Cells
Jing Shi et al.
ANALYTICAL CHEMISTRY (2016)
Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins
Sungyul Lee et al.
CELL (2016)
Spatially resolved proteomic mapping in living cells with the engineered peroxidase APEX2
Victoria Hung et al.
NATURE PROTOCOLS (2016)
CRISPR-Cas adaptation: insights into the mechanism of action
Gil Amitai et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Ubiquitous accumulation of 3′ mRNA decay fragments in Saccharomyces cerevisiae mRNAs with chromosomally integrated MS2 arrays
Jennifer F. Garcia et al.
RNA (2016)
Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems
Prarthana Mohanraju et al.
SCIENCE (2016)
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
Omar O. Abudayyeh et al.
SCIENCE (2016)
NORAD: Defender of the Genome
Andrea Ventura
TRENDS IN GENETICS (2016)
Transgenic Mouse Expressing Optical MicroRNA Reporter for Monitoring MicroRNA-124 Action during Development
Yoori Choi et al.
FRONTIERS IN MOLECULAR NEUROSCIENCE (2016)
Nature-Inspired DNA Nanosensor for Real-Time in Situ Detection of mRNA in Living Cells
Chor Yong Tay et al.
ACS NANO (2015)
Single Cell Nanobiosensors for Dynamic Gene Expression Profiling in Native Tissue Microenvironments
Shue Wang et al.
ADVANCED MATERIALS (2015)
A self-assembling magnetic resonance beacon for the detection of microRNA-1
Jonghwan Lee et al.
CHEMICAL COMMUNICATIONS (2015)
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems
Sergey Shmakov et al.
MOLECULAR CELL (2015)
The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3
Colleen A. McHugh et al.
NATURE (2015)
An updated evolutionary classification of CRISPR-Cas systems
Kira S. Makarova et al.
NATURE REVIEWS MICROBIOLOGY (2015)
ECHO-liveFISH: in vivo RNA labeling reveals dynamic regulation of nuclear RNA foci in living tissues
Ikumi Oomoto et al.
NUCLEIC ACIDS RESEARCH (2015)
Quantification and real-time tracking of RNA in live cells using Sticky-flares
William E. Briley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
MS2 coat proteins bound to yeast mRNAs block 5 ' to 3 ' degradation and trap mRNA decay products: implications for the localization of mRNAs by MS2-MCP system
Jennifer F. Garcia et al.
RNA (2015)
Quantum Dot-Based Molecular Beacon to Monitor Intracellular MicroRNAs
Jonghwan Lee et al.
SENSORS (2015)
Single-molecule insights into mRNA dynamics in neurons
Adina R. Buxbaum et al.
TRENDS IN CELL BIOLOGY (2015)
Directed evolution of APEX2 for electron microscopy and proximity labeling
Stephanie S. Lam et al.
NATURE METHODS (2015)
RNA Mango Aptamer-Fluorophore: A Bright, High-Affinity Complex for RNA Labeling and Tracking
Elena V. Dolgosheina et al.
ACS CHEMICAL BIOLOGY (2014)
Mapping Photothermally Induced Gene Expression in Living Cells and Tissues by Nanorod-Locked Nucleic Acid Complexes
Reza Riahi et al.
ACS NANO (2014)
In vitro and in vivo direct monitoring of miRNA-22 expression in isoproterenol-induced cardiac hypertrophy by bioluminescence imaging
Yingfeng Tu et al.
EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING (2014)
Ribonomic approaches to study the RNA-binding proteome
Camilla Faoro et al.
FEBS LETTERS (2014)
Plug-and-Play Fluorophores Extend the Spectral Properties of Spinach
Wenjiao Song et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
Quantitative imaging of single mRNA splice variants in living cells
Kyuwan Lee et al.
NATURE NANOTECHNOLOGY (2014)
Imaging dynamic interactions between spliceosomal proteins and pre-mRNA in living cells
Jose Rino et al.
METHODS (2014)
Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters
Ilchung Shin et al.
NUCLEIC ACIDS RESEARCH (2014)
RNA imaging in living cells - Methods and applications
Martyna O. Urbanek et al.
RNA BIOLOGY (2014)
Background free imaging of single mRNAs in live cells using split fluorescent proteins
Bin Wu et al.
SCIENTIFIC REPORTS (2014)
A Genetic Screen Based on in Vivo RNA Imaging Reveals Centrosome-Independent Mechanisms for Localizing gurken Transcripts in Drosophila
Rippei Hayashi et al.
G3-GENES GENOMES GENETICS (2014)
Genome-wide Mapping of Cellular Protein–RNA Interactions Enabled by Chemical Crosslinking
Xiaoyu Li et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2014)
The basic building blocks and evolution of CRISPR-Cas systems
Kira S. Makarova et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2013)
Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
Vivek Anantharaman et al.
BIOLOGY DIRECT (2013)
Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System
Baohui Chen et al.
CELL (2013)
RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence
Gregoire Masliah et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2013)
Brightness Enhanced DNA FIT-Probes for Wash-Free RNA Imaging in Tissue
Felix Hoevelmann et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)
Single-molecule analysis of gene expression using two-color RNA labeling in live yeast
Sami Hocine et al.
NATURE METHODS (2013)
In situ sequencing for RNA analysis in preserved tissue and cells
Rongqin Ke et al.
NATURE METHODS (2013)
Imaging mRNA expression levels in living cells with PNA center dot DNA binary FRET probes delivered by cationic shell-crosslinked nanoparticles
Zhenghui Wang et al.
ORGANIC & BIOMOLECULAR CHEMISTRY (2013)
Noninvasive Visualization of MicroRNA-16 in the Chemoresistance of Gastric Cancer Using a Dual Reporter Gene Imaging System
Fu Wang et al.
PLOS ONE (2013)
Mechanism for the endocytosis of spherical nucleic acid nanoparticle conjugates
Chung Hang J. Choi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
CRISPR-Cas: Evolution of an RNA-based adaptive immunity system in prokaryotes
Eugene V. Koonin et al.
RNA BIOLOGY (2013)
Fluorescent Probes for Imaging Endogenous β-Actin mRNA in Living Cells Using Fluorescent Protein-Tagged Pumilio
Hideaki Yoshimura et al.
ACS CHEMICAL BIOLOGY (2012)
Dual optical biosensors for imaging microRNA-1 during myogenesis
Won Jun Kang et al.
BIOMATERIALS (2012)
RNA-binding proteins involved in RNA localization and their implications in neuronal diseases
Marco Tolino et al.
EUROPEAN JOURNAL OF NEUROSCIENCE (2012)
A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells
Kyle J. Roux et al.
JOURNAL OF CELL BIOLOGY (2012)
Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation
Tetsuya Muramoto et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Imaging Translation in Single Cells Using Fluorescent Microscopy
Jeffrey A. Chao et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)
Molecular Imaging with Activatable Reporter Systems
Gang Niu et al.
THERANOSTICS (2012)
Visualization of Nonengineered Single mRNAs in Living Cells Using Genetically Encoded Fluorescent Probes
Toshimichi Yamada et al.
ANALYTICAL CHEMISTRY (2011)
Fluorescence Imaging of Influenza H1N1 mRNA in Living Infected Cells Using Single-Chromophore FIT-PNA
Susann Kummer et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)
Molecular beacon-based bioimaging of multiple microRNAs during myogenesis
Won Jun Kang et al.
BIOMATERIALS (2011)
ECHO probes: a concept of fluorescence control for practical nucleic acid sensing
Akimitsu Okamoto
CHEMICAL SOCIETY REVIEWS (2011)
Quantitative Profiling of In Vivo-assembled RNA-Protein Complexes Using a Novel Integrated Proteomic Approach
Becky Pinjou Tsai et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions
Ci Chu et al.
MOLECULAR CELL (2011)
A transgenic mouse for in vivo detection of endogenous labeled mRNA
Timothee Lionnet et al.
NATURE METHODS (2011)
Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation
Anton Wutz
NATURE REVIEWS GENETICS (2011)
The genomic binding sites of a noncoding RNA
Matthew D. Simon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
RNA Mimics of Green Fluorescent Protein
Jeremy S. Paige et al.
SCIENCE (2011)
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
Luciano A. Marraffini et al.
NATURE REVIEWS GENETICS (2010)
Whole mount in situ hybridization detection of mRNAs using short LNA containing DNA oligonucleotide probes
Diana K. Darnell et al.
RNA (2010)
Nano-flares for mRNA Regulation and Detection
Andrew E. Prigodich et al.
ACS NANO (2009)
A study of microRNAs in silico and in vivo: bioimaging of microRNA biogenesis and regulation
Soonhag Kim et al.
FEBS JOURNAL (2009)
In Vivo Imaging of miR-221 Biogenesis in Papillary Thyroid Carcinoma
Hyun Joo Kim et al.
MOLECULAR IMAGING AND BIOLOGY (2009)
Noninvasive Visualization of microRNA by Bioluminescence Imaging
Gang Niu et al.
MOLECULAR IMAGING AND BIOLOGY (2009)
Polyvalent DNA Nanoparticle Conjugates Stabilize Nucleic Acids
Dwight S. Seferos et al.
NANO LETTERS (2009)
A reporter gene imaging system for monitoring microRNA biogenesis
Hae Young Ko et al.
NATURE PROTOCOLS (2009)
In Vivo Monitoring of mRNA Movement in Drosophila Body Wall Muscle Cells Reveals the Presence of Myofiber Domains
Alice M. C. van Gemert et al.
PLOS ONE (2009)
In vivo Imaging of oskar mRNA transport reveals the mechanism of posterior localization
Vitaly L. Zimyanin et al.
CELL (2008)
Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions
Brent W. Sutherland et al.
JOURNAL OF MASS SPECTROMETRY (2008)
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
Donny D. Licatalosi et al.
NATURE (2008)
Fluorescence complementation: an emerging tool for biological research
Y. John Shyu et al.
TRENDS IN BIOTECHNOLOGY (2008)
Nano-flares: Probes for transfection and mRNA detection in living cells
Dwight S. Seferos et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
Avoiding false-positive signals with nuclease-vulnerable molecular beacons in single living cells
Antony K. Chen et al.
NUCLEIC ACIDS RESEARCH (2007)
CRISPR provides acquired resistance against viruses in prokaryotes
Rodolphe Barrangou et al.
SCIENCE (2007)
A protocol for PAIR : PNA-assisted identification of RNA binding proteins in living cells
Fanyi Zeng et al.
NATURE PROTOCOLS (2006)
Structure and function of telomerase RNA
Carla A. Theimer et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)
From birth to death: The complex lives of eukaryotic mRNAs
MJ Moore
SCIENCE (2005)
Telomerase RNA structure and function: implications for dyskeratosis congenita
JL Chen et al.
TRENDS IN BIOCHEMICAL SCIENCES (2004)
Imaging native β-actin mRNA in motile fibroblasts
S Tyagi et al.
BIOPHYSICAL JOURNAL (2004)
Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes
SAE Marras et al.
NUCLEIC ACIDS RESEARCH (2002)
In vivo binding of active heat shock transcription factor 1 to human chromosome 9 heterochromatin during stress
C Jolly et al.
JOURNAL OF CELL BIOLOGY (2002)
Messenger-RNA-binding proteins and the messages they carry
G Dreyfuss et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2002)
Single-mismatch detection using gold-quenched fluorescent oligonucleotides
B Dubertret et al.
NATURE BIOTECHNOLOGY (2001)
Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle
H Stark et al.
NATURE (2001)