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CACHE (Critical Assessment of Computational Hit-finding Experiments): A public-private partnership benchmarking initiative to enable the development of computational methods for hit-finding

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NATURE REVIEWS CHEMISTRY
卷 6, 期 4, 页码 287-295

出版社

NATURE PORTFOLIO
DOI: 10.1038/s41570-022-00363-z

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资金

  1. Boehringer Ingelheim
  2. Bristol Myers Squibb
  3. Genome Canada through Ontario Genomics Institute [OGI-196]
  4. Janssen
  5. Merck KGaA (aka EMD in Canada and USA)
  6. Pfizer
  7. Takeda
  8. Innovative Medicines Initiative 2 Joint Undertaking (JU) [875510]
  9. European Union
  10. EFPIA
  11. Ontario Institute for Cancer Research
  12. Royal Institution for the Advancement of Learning McGill University
  13. National Institute of General Medical Sciences [GM061300, GM133836, R01GM124270]
  14. National Cancer Institute [P30CA008748]
  15. National Energy Research Scientific Computing Center (NERSC), a U.S. Department of Energy Office of Science User Facility at Lawrence Berkeley National Laboratory [DE-AC02-05CH11231]
  16. Engineering and Physical Sciences Research Council
  17. Winton Programme for the Physics of Sustainability
  18. National Institutes of Health Common Fund programme, Illuminating the Druggable Genome [CA224370, TR002278]
  19. Natural Science and Engineering Research Council (NSERC) of Canada
  20. Bayer AG [1097737]
  21. Genentech
  22. Kungliga Tekniska Hoegskolan
  23. AstraZeneca

向作者/读者索取更多资源

One goal of computational chemistry is to improve small-molecule hit-finding algorithms through prediction and experimental testing. CACHE is a public benchmarking project that evaluates and compares computational approaches, aiming to discover new small-molecule binders for important protein targets.
One aspirational goal of computational chemistry is to predict potent and drug-like binders for any protein, such that only those that bind are synthesized. In this Roadmap, we describe the launch of Critical Assessment of Computational Hit-finding Experiments (CACHE), a public benchmarking project to compare and improve small-molecule hit-finding algorithms through cycles of prediction and experimental testing. Participants will predict small-molecule binders for new and biologically relevant protein targets representing different prediction scenarios. Predicted compounds will be tested rigorously in an experimental hub, and all predicted binders as well as all experimental screening data, including the chemical structures of experimentally tested compounds, will be made publicly available and not subject to any intellectual property restrictions. The ability of a range of computational approaches to find novel binders will be evaluated, compared and openly published. CACHE will launch three new benchmarking exercises every year. The outcomes will be better prediction methods, new small-molecule binders for target proteins of importance for fundamental biology or drug discovery and a major technological step towards achieving the goal of Target 2035, a global initiative to identify pharmacological probes for all human proteins. Critical Assessment of Computational Hit-finding Experiments (CACHE) is a public benchmarking project to compare and improve computational small-molecule hit-finding approaches through cycles of prediction, compound synthesis and experimental testing. By that, CACHE will enable a more efficient and effective approach to hit identification and drug discovery.

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