相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks
Zhichao Zhou et al.
MICROBIOME (2022)
Hydrogen sulfide toxicity in the gut environment: Meta-analysis of sulfate-reducing and lactic acid bacteria in inflammatory processes
Dani Dordevic et al.
JOURNAL OF ADVANCED RESEARCH (2021)
The Capacity to Produce Hydrogen Sulfide (H2S) via Cysteine Degradation Is Ubiquitous in the Human Gut Microbiome
Domenick J. Braccia et al.
FRONTIERS IN MICROBIOLOGY (2021)
Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men
Long H. Nguyen et al.
GASTROENTEROLOGY (2020)
A complete domain-to-species taxonomy for Bacteria and Archaea
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2020)
Dietary Methionine Restriction Ameliorated Fat Accumulation, Systemic Inflammation, and Increased Energy Metabolism by Altering Gut Microbiota in Middle-Aged Mice Administered Different Fat Diets
Guoqing Wu et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2020)
Scaling read aligners to hundreds of threads on general-purpose processors
Ben Langmead et al.
BIOINFORMATICS (2019)
A glycyl radical enzyme enables hydrogen sulfide production by the human intestinal bacterium Bilophila wadsworthia
Spencer C. Peck et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
Andrew Maltez Thomas et al.
NATURE MEDICINE (2019)
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
Jakob Wirbel et al.
NATURE MEDICINE (2019)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli et al.
CELL (2019)
Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle
Karthik Anantharaman et al.
ISME JOURNAL (2018)
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2018)
Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome
Geoffrey D. Hannigan et al.
MBIO (2018)
Proportion and Number of Cancer Cases and Deaths Attributable to Potentially Modifiable Risk Factors in the United States
Farhad Islami et al.
CA-A CANCER JOURNAL FOR CLINICIANS (2018)
Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer
Jun Yu et al.
GUT (2017)
Race-dependent association of sulfidogenic bacteria with colorectal cancer
Cemal Yazici et al.
GUT (2017)
Strains, functions and dynamics in the expanded Human Microbiome Project
Jason Lloyd-Price et al.
NATURE (2017)
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers et al.
NATURE BIOTECHNOLOGY (2017)
Methionine restriction on oxidative stress and immune response in dss-induced colitis mice
Gang Liu et al.
ONCOTARGET (2017)
Fusobacterium nucleatum in colorectal carcinoma tissue and patient prognosis
Kosuke Mima et al.
GUT (2016)
Measurement of bacterial replication rates in microbial communities
Christopher T. Brown et al.
NATURE BIOTECHNOLOGY (2016)
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
Karthik Anantharaman et al.
NATURE COMMUNICATIONS (2016)
Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing
Emily Vogtmann et al.
PLOS ONE (2016)
Taurocholic acid metabolism by gut microbes and colon cancer
Jason M. Ridlon et al.
GUT MICROBES (2016)
Hydrogen sulfide (H2S) attenuates uranium-induced acute nephrotoxicity through oxidative stress and inflammatory response via Nrf2-NF-κB pathways
Jifang Zheng et al.
CHEMICO-BIOLOGICAL INTERACTIONS (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Gut microbiome development along the colorectal adenoma-carcinoma sequence
Qiang Feng et al.
NATURE COMMUNICATIONS (2015)
Fat, fibre and cancer risk in African Americans and rural Africans
Stephen J. D. O'Keefe et al.
NATURE COMMUNICATIONS (2015)
Fusobacterium nucleatum and T Cells in Colorectal Carcinoma
Kosuke Mima et al.
JAMA ONCOLOGY (2015)
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi) sulfite reductases
Albert Leopold Mueller et al.
ISME Journal (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Hydrogen sulfide protected gastric epithelial cell from ischemia/reperfusion injury by Keapl s-sulfhydration, MAPK dependent anti-apoptosis and NF-κB dependent anti-inflammation pathway
Cheng Guo et al.
EUROPEAN JOURNAL OF PHARMACOLOGY (2014)
Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota
Lindsey Albenberg et al.
GASTROENTEROLOGY (2014)
Potential of fecal microbiota for early-stage detection of colorectal cancer
Georg Zeller et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
Diet rapidly and reproducibly alters the human gut microbiome
Lawrence A. David et al.
NATURE (2014)
The SILVA and All-species Living Tree Project (LTP) taxonomic frameworks
Pelin Yilmaz et al.
NUCLEIC ACIDS RESEARCH (2014)
Fusobacterium nucleatum Potentiates Intestinal Tumorigenesis and Modulates the Tumor-Immune Microenvironment
Aleksandar D. Kostic et al.
CELL HOST & MICROBE (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Fusobacterium Is Associated with Colorectal Adenomas
Amber N. McCoy et al.
PLOS ONE (2013)
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
Elmar Pruesse et al.
BIOINFORMATICS (2012)
The Impact of the Gut Microbiota on Human Health: An Integrative View
Jose C. Clemente et al.
CELL (2012)
Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
Mauro Castellarin et al.
GENOME RESEARCH (2012)
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
Aleksandar D. Kostic et al.
GENOME RESEARCH (2012)
Abundance and diversity of mucosa-associated hydrogenotrophic microbes in the healthy human colon
Gerardo M. Nava et al.
ISME JOURNAL (2012)
Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice
Suzanne Devkota et al.
NATURE (2012)
Functional interactions between the gut microbiota and host metabolism
Valentina Tremaroli et al.
NATURE (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer
Weiguang Chen et al.
PLOS ONE (2012)
IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
Victor M. Markowitz et al.
PLOS ONE (2012)
Bile Acid Is a Host Factor That Regulates the Composition of the Cecal Microbiota in Rats
K. B. M. Saiful Islam et al.
GASTROENTEROLOGY (2011)
Towards the Human Colorectal Cancer Microbiome
Julian R. Marchesi et al.
PLOS ONE (2011)
H2S: A Universal Defense Against Antibiotics in Bacteria
Konstantin Shatalin et al.
SCIENCE (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Hydrogen sulfide induces human colon cancer cell proliferation: role of Akt, ERK and p21
Wen-Jie Cai et al.
CELL BIOLOGY INTERNATIONAL (2010)
Gut inflammation provides a respiratory electron acceptor for Salmonella
Sebastian E. Winter et al.
NATURE (2010)
Culture-independent analysis of desulfovibrios in the human distal colon of healthy, colorectal cancer and polypectomized individuals
Pauline D. Scanlan et al.
FEMS MICROBIOLOGY ECOLOGY (2009)
Bile Acid Sulfation: A Pathway of Bile Acid Elimination and Detoxification
Yazen Alnouti
TOXICOLOGICAL SCIENCES (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Whole tissue hydrogen sulfide concentrations are orders of magnitude lower than presently accepted values
Julie Furne et al.
AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY (2008)
Oral malodorous compound causes apoptosis and genomic DNA damage in human gingival fibroblasts
K. Yaegaki et al.
JOURNAL OF PERIODONTAL RESEARCH (2008)
H2S as a physiologic vasorelaxant:: Hypertension in mice with deletion of cystathionine γ-lyase
Guangdong Yang et al.
SCIENCE (2008)
The Human Microbiome Project
Peter J. Turnbaugh et al.
NATURE (2007)
Hydrogen sulfide induces direct radical-associated DNA damage
Matias S. Attene-Ramos et al.
MOLECULAR CANCER RESEARCH (2007)
Evidence that hydrogen sulfide is a genotoxic agent
MS Attene-Ramos et al.
MOLECULAR CANCER RESEARCH (2006)
Biochemical differentiation and comparison of Desulfovibrio species and other phenotypically similar genera
YA Warren et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Identification and quantitation of mucosal and faecal desulfovibrios using real time polymerase chain reaction
A Fite et al.
GUT (2004)
Commensal bacteria, redox stress, and colorectal cancer: Mechanisms and models
MM Huycke et al.
EXPERIMENTAL BIOLOGY AND MEDICINE (2004)
Hydrogen sulfide induces serum-independent cell cycle entry in nontransformed rat intestinal epithelial cells
B Deplancke et al.
FASEB JOURNAL (2003)
Screening of sulfate-reducing bacteria in colonoscopy samples from healthy and colitic human gut mucosa
V Zinkevich et al.
FEMS MICROBIOLOGY ECOLOGY (2000)
分享论文
