相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Improved metagenome binning and assembly using deep variational autoencoders
Jakob Nybo Nissen et al.
NATURE BIOTECHNOLOGY (2021)
Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit
Fernando Meyer et al.
NATURE PROTOCOLS (2021)
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
I-Min A. Chen et al.
NUCLEIC ACIDS RESEARCH (2021)
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
Pierre-Alain Chaumeil et al.
BIOINFORMATICS (2020)
Role of gut microbiota in type 2 diabetes pathophysiology
Manoj Gurung et al.
EBIOMEDICINE (2020)
A complete domain-to-species taxonomy for Bacteria and Archaea
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2020)
Estimate of the sequenced proportion of the global prokaryotic genome
Zheng Zhang et al.
MICROBIOME (2020)
A new genomic blueprint of the human gut microbiota
Alexandre Almeida et al.
NATURE (2019)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli et al.
CELL (2019)
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
Christian M. K. Sieber et al.
NATURE MICROBIOLOGY (2018)
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2018)
metaSPAdes: a new versatile metagenomic assembler
Sergey Nurk et al.
GENOME RESEARCH (2017)
Shotgun metagenomics, from sampling to analysis
Christopher Quince et al.
NATURE BIOTECHNOLOGY (2017)
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks et al.
NATURE MICROBIOLOGY (2017)
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
Yu-Wei Wu et al.
BIOINFORMATICS (2016)
PhyloPythiaS plus : a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes
Ivan Gregor et al.
PEERJ (2016)
Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes
Hsin-Hung Lin et al.
SCIENTIFIC REPORTS (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Specific gut microbiota features and metabolic markers in postmenopausal women with obesity
L. K. Brahe et al.
NUTRITION & DIABETES (2015)
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
Dongwan D. Kang et al.
PEERJ (2015)
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
H. Bjorn Nielsen et al.
NATURE BIOTECHNOLOGY (2014)
Binning metagenomic contigs by coverage and composition
Johannes Alneberg et al.
NATURE METHODS (2014)
GroopM: an automated tool for the recovery of population genomes from related metagenomes
Michael Imelfort et al.
PEERJ (2014)
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
Yu-Wei Wu et al.
MICROBIOME (2014)
nhmmer: DNA homology search with profile HMMs
Travis J. Wheeler et al.
BIOINFORMATICS (2013)
Gut metagenome in European women with normal, impaired and diabetic glucose control
Fredrik H. Karlsson et al.
NATURE (2013)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
Chris L. Dupont et al.
ISME JOURNAL (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
Toshiaki Namiki et al.
NUCLEIC ACIDS RESEARCH (2012)
Ray Meta: scalable de novo metagenome assembly and profiling
Sebastien Boisvert et al.
GENOME BIOLOGY (2012)
FragGeneScan: predicting genes in short and error-prone reads
Mina Rho et al.
NUCLEIC ACIDS RESEARCH (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
A Catalog of Reference Genomes from the Human Microbiome
Karen E. Nelson et al.
SCIENCE (2010)
MetaSim-A Sequencing Simulator for Genomics and Metagenomics
Daniel C. Richter et al.
PLOS ONE (2008)
Accurate phylogenetic classification of variable-length DNA fragments
Alice Carolyn McHardy et al.
NATURE METHODS (2007)
Evolutionary implications of microbial genome tetranucleotide frequency biases
DT Pride et al.
GENOME RESEARCH (2003)
分享论文
