4.5 Article

A chromosomal inversion may facilitate adaptation despite periodic gene flow in a freshwater fish

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Natural selection and the distribution of chromosomal inversion lengths

Tim Connallon et al.

Summary: Chromosomal inversions play a substantial role in genome evolution, with the length of inversions affecting their evolutionary fates across different types. Small rearrangements contribute the most to genome evolution under neutral and underdominant scenarios, while directly beneficial inversions prefer small rearrangements for fixation and maintain intermediate-to-large inversions as balanced polymorphisms.

MOLECULAR ECOLOGY (2022)

Article Evolutionary Biology

The ghosts of propagation past: haplotype information clarifies the relative influence of stocking history and phylogeographic processes on contemporary population structure of walleye (Sander vitreus)

Matthew L. Bootsma et al.

Summary: The study found significant differentiation in walleye population structure between Minnesota and Wisconsin, with additional substructure within each state. Population structure did not consistently follow drainage boundaries. While past stocking practices influenced walleye population structure, most populations still retain native ancestry, with potential for purging non-native alleles and haplotypes in the absence of stocking.

EVOLUTIONARY APPLICATIONS (2021)

Editorial Material Fisheries

Stizostedion Rafinesque, 1820 (Percidae) is the Valid Generic Name for Walleye, Sauger, and Eurasian Pikeperch

John Clay Bruner

Summary: Theodore Nicholas Gill mistakenly considered the Latin name Sander as the senior synonym for Stizostedion. Some authors have continued using the correct generic name Stizostedion. This error has forced fishery biologists to use the incorrect generic name for one of North America's most important freshwater fisheries.

FISHERIES (2021)

Article Evolutionary Biology

Mixed-stock analysis using Rapture genotyping to evaluate stock-specific exploitation of a walleye population despite weak genetic structure

Peter T. Euclide et al.

Summary: Genetic marker-based mixed-stock analyses have been useful in fisheries management for populations with strong genetic differentiation, but genomic sequencing can now provide the necessary resolution to conduct mixed-stock assignments for populations with weak differentiation. This study used genomic data to analyze the walleye fisheries in Lake Erie, revealing clear spatial differences in stock contributions and demonstrating the utility of genomic data for mixed-stock analysis in fish populations with weak population structure.

EVOLUTIONARY APPLICATIONS (2021)

Article Environmental Sciences

Historical and contemporary movement and survival rates of walleye (Sander vitreus) in Lake Winnipeg, Canada

Nicole A. Turner et al.

Summary: Understanding patterns of fish movement in Lake Winnipeg is crucial for effective management, as shown by low but measurable movement between basins over time. Walleye tend to move in a south-north direction, with low survival rates supporting recent management actions to reduce fishing pressure in the lake.

JOURNAL OF GREAT LAKES RESEARCH (2021)

Article Genetics & Heredity

Network Analysis of Linkage Disequilibrium Reveals Genome Architecture in Chum Salmon

Garrett McKinney et al.

G3-GENES GENOMES GENETICS (2020)

Article Biochemistry & Molecular Biology

Performing Highly Efficient Genome Scans for Local Adaptation with R Package pcadapt Version 4

Florian Prive et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Biochemistry & Molecular Biology

Multiple chromosomal inversions contribute to adaptive divergence of a dune sunflower ecotype

Kaichi Huang et al.

MOLECULAR ECOLOGY (2020)

Article Biodiversity Conservation

Applying a gene-suite approach to examine the physiological status of wild-caught walleye (Sander vitreus)

Jennifer D. Jeffrey et al.

Summary: Molecular techniques are increasingly used in conservation physiology to understand how wild organisms respond to stressors. This study developed a gill transcriptome for walleye and found that fish confined in the Delta Marsh may exhibit sub-lethal responses to high temperature and low oxygen conditions. The results provide valuable information for conservation management and highlight the usefulness of pairing transcriptomic techniques with multivariate statistics.

CONSERVATION PHYSIOLOGY (2020)

Article Biochemistry & Molecular Biology

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

Brenna R. Forester et al.

MOLECULAR ECOLOGY (2018)

Review Ecology

Eco-Evolutionary Genomics of Chromosomal Inversions

Maren Wellenreuther et al.

TRENDS IN ECOLOGY & EVOLUTION (2018)

Article Genetics & Heredity

A One-Penny Imputed Genome from Next-Generation Reference Panels

Brian L. Browning et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2018)

Article Genetics & Heredity

A Unified Characterization of Population Structure and Relatedness

Bruce S. Weir et al.

GENETICS (2017)

Article Biochemical Research Methods

Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro et al.

NATURE METHODS (2017)

Article Genetics & Heredity

A Unified Characterization of Population Structure and Relatedness

Bruce S. Weir et al.

GENETICS (2017)

Article Water Resources

The 2014 flood event in the Assiniboine River Basin: Causes, assessment and damage

Habib Ahmari et al.

CANADIAN WATER RESOURCES JOURNAL (2016)

Article Evolutionary Biology

Islands of Divergence in the Atlantic Cod Genome Represent Polymorphic Chromosomal Rearrangements

Marte Sodeland et al.

GENOME BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod

Tina Graceline Kirubakaran et al.

MOLECULAR ECOLOGY (2016)

Review Biochemistry & Molecular Biology

Genomics of local adaptation with gene flow

Anna Tigano et al.

MOLECULAR ECOLOGY (2016)

Article Genetics & Heredity

A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly

Hideki Nishikawa et al.

NATURE GENETICS (2015)

Article Multidisciplinary Sciences

The genomics of ecological vicariance in threespine stickleback fish

Marius Roesti et al.

NATURE COMMUNICATIONS (2015)

Article Biochemical Research Methods

Evaluating synteny for improved comparative studies

Cristina G. Ghiurcuta et al.

BIOINFORMATICS (2014)

Article Genetics & Heredity

Chromosomal Evolution and Patterns of Introgression in Helianthus

Jessica G. Barb et al.

GENETICS (2014)

Article Biochemistry & Molecular Biology

Stacks: an analysis tool set for population genomics

Julian Catchen et al.

MOLECULAR ECOLOGY (2013)

Article Biochemical Research Methods

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

H. E. L. Lischer et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

A high-performance computing toolset for relatedness and principal component analysis of SNP data

Xiuwen Zheng et al.

BIOINFORMATICS (2012)

Article Environmental Sciences

Microsatellite and mitochondrial DNA markers show no evidence of population structure in walleye (Sander vitreus) in Lake Winnipeg

Stephanie M. Backhouse-James et al.

JOURNAL OF GREAT LAKES RESEARCH (2012)

Article Multidisciplinary Sciences

The genomic basis of adaptive evolution in threespine sticklebacks

Felicity C. Jones et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

i-ADHoRe 3.0-fast and sensitive detection of genomic homology in extremely large data sets

Sebastian Proost et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Genetics & Heredity

Population Genomics of Inversion Polymorphisms in Drosophila melanogaster

Russell B. Corbett-Detig et al.

PLOS GENETICS (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Evolutionary Biology

Effects of Inversions on Within- and Between-Species Recombination and Divergence

Laurie S. Stevison et al.

GENOME BIOLOGY AND EVOLUTION (2011)

Article Genetics & Heredity

Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences

Julian M. Catchen et al.

G3-GENES GENOMES GENETICS (2011)

Article Multidisciplinary Sciences

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Signatures of founder effects, admixture, and selection in the Ashkenazi Jewish population

Steven M. Bray et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Fast model-based estimation of ancestry in unrelated individuals

David H. Alexander et al.

GENOME RESEARCH (2009)

Article Biochemistry & Molecular Biology

Circos: An information aesthetic for comparative genomics

Martin Krzywinski et al.

GENOME RESEARCH (2009)

Article Biochemical Research Methods

adegenet:: a R package for the multivariate analysis of genetic markers

Thibaut Jombart

BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

Genome-wide detection and characterization of positive selection in human populations

Pardis C. Sabeti et al.

NATURE (2007)

Article Genetics & Heredity

PLINK: A tool set for whole-genome association and population-based linkage analyses

Shaun Purcell et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2007)

Article Multidisciplinary Sciences

Structure of linkage disequilibrium and phenotypic associations in the maize genome

DL Remington et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Evolutionary Biology

EASYPOP (version 1.7): A computer program for population genetics simulations

F Balloux

JOURNAL OF HEREDITY (2001)

Article Genetics & Heredity

Consistent long-range linkage disequilibrium generated by admixture in a Bantu-Semitic hybrid population

JF Wilson et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2000)