相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The relationship between genome structure and function
A. Marieke Oudelaar et al.
NATURE REVIEWS GENETICS (2021)
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation
Naoki Kubo et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2021)
Fast-acting chemical tools to delineate causality in transcriptional control
Martin G. Jaeger et al.
MOLECULAR CELL (2021)
Distinct properties and functions of CTCF revealed by a rapidly inducible degron system
Jing Luan et al.
CELL REPORTS (2021)
Enhancer-associated H3K4 methylation safeguards in vitro germline competence
Tore Bleckwehl et al.
NATURE COMMUNICATIONS (2021)
Genome folding through loop extrusion by SMC complexes
Iain F. Davidson et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2021)
Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression
Erica S. M. Vos et al.
MOLECULAR CELL (2021)
Defining genome architecture at base-pair resolution
Peng Hua et al.
NATURE (2021)
Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open Questions
Leonid Mirny et al.
Cold Spring Harbor Perspectives in Biology (2021)
How subtle changes in 3D structure can create large changes in transcription
Jordan Yupeng Xiao et al.
ELIFE (2021)
Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells
James D. P. Rhodes et al.
CELL REPORTS (2020)
Dynamics of the 4D genome during in vivo lineage specification and differentiation
A. Marieke Oudelaar et al.
NATURE COMMUNICATIONS (2020)
Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
Tsung-Han S. Hsieh et al.
MOLECULAR CELL (2020)
Ultrastructural Details of Mammalian Chromosome Architecture
Nils Krietenstein et al.
MOLECULAR CELL (2020)
Three-dimensional chromatin in disease: What holds us together and what drives us apart?
Daniel M. Ibrahim et al.
CURRENT OPINION IN CELL BIOLOGY (2020)
CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response
Gregoire Stik et al.
NATURE GENETICS (2020)
Cohesin promotes stochastic domain intermingling to ensure proper regulation of boundary-proximal genes
Jennifer M. Luppino et al.
NATURE GENETICS (2020)
Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers
Michiel J. Thiecke et al.
CELL REPORTS (2020)
Regulation of single-cell genome organization into TADs and chromatin nanodomains
Quentin Szabo et al.
NATURE GENETICS (2020)
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
Yad Ghavi-Helm et al.
NATURE GENETICS (2019)
Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture
Alexandra Despang et al.
NATURE GENETICS (2019)
Preformed chromatin topology assists transcriptional robustness of Shh during limb development
Christina Paliou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF
Anders S. Hansen et al.
MOLECULAR CELL (2019)
CTCF-dependent chromatin boundaries formed by asymmetric nucleosome arrays with decreased linker length
Christopher T. Clarkson et al.
NUCLEIC ACIDS RESEARCH (2019)
Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
Sergi Cuartero et al.
NATURE IMMUNOLOGY (2018)
Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells
Bogdan Bintu et al.
SCIENCE (2018)
Two independent modes of chromatin organization revealed by cohesin removal
Wibke Schwarzer et al.
NATURE (2017)
Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo
Lars L. P. Hanssen et al.
NATURE CELL BIOLOGY (2017)
How best to identify chromosomal interactions: a comparison of approaches
James O. J. Davies et al.
NATURE METHODS (2017)
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins
Gordana Wutz et al.
EMBO JOURNAL (2017)
Cohesin Loss Eliminates All Loop Domains
Suhas S. P. Rao et al.
CELL (2017)
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
Elphege P. Nora et al.
CELL (2017)
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
Hannah K. Long et al.
CELL (2016)
The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
Orsolya Symmons et al.
DEVELOPMENTAL CELL (2016)
Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome
Tsung-Han S. Hsieh et al.
NATURE METHODS (2016)
Super-Enhancers at the Nanog Locus Differentially Regulate Neighboring Pluripotency-Associated Genes
Steven Blinka et al.
CELL REPORTS (2016)
Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
Tsung-Han S. Hsieh et al.
CELL (2015)
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
Dario G. Lupianez et al.
CELL (2015)
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
Ya Guo et al.
CELL (2015)
CTCF Binding Polarity Determines Chromatin Looping
Elzo de Wit et al.
MOLECULAR CELL (2015)
Convergence of Developmental and Oncogenic Signaling Pathways at Transcriptional Super-Enhancers
Denes Hnisz et al.
MOLECULAR CELL (2015)
Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
Carlos Gomez-Marin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
Adrian L. Sanborn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
Varun Narendra et al.
SCIENCE (2015)
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant et al.
GENOME BIOLOGY (2015)
Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
Jill M. Dowen et al.
CELL (2014)
A Sox2 distal enhancer cluster regulates embryonic stem cell differentiation potential
Harry Y. Zhou et al.
GENES & DEVELOPMENT (2014)
Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
Nicola H. Dryden et al.
GENOME RESEARCH (2014)
Functional and topological characteristics of mammalian regulatory domains
Orsolya Symmons et al.
GENOME RESEARCH (2014)
A comparative encyclopedia of DNA elements in the mouse genome
Feng Yue et al.
NATURE (2014)
CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells
Yan Li et al.
PLOS ONE (2014)
Targeted Chromatin Capture (T2C): a novel high resolution high throughput method to detect genomic interactions and regulatory elements
Petros Kolovos et al.
EPIGENETICS & CHROMATIN (2014)
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
Warren A. Whyte et al.
NATURE (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Spatial partitioning of the regulatory landscape of the X-inactivation centre
Elphege P. Nora et al.
NATURE (2012)
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
Maxim Imakaev et al.
NATURE METHODS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoc et al.
BIOINFORMATICS (2011)
DNA-binding factors shape the mouse methylome at distal regulatory regions
Michael B. Stadler et al.
NATURE (2011)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
分享论文
