4.8 Article

Structure of ATP synthase under strain during catalysis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

ATP synthase hexamer assemblies shape cristae of Toxoplasma mitochondria

Alexander Muhleip et al.

Summary: The unique assembly of mitochondrial ATP synthase in Apicomplexa is crucial for maintaining cristae morphology, as demonstrated by the arrangement of cyclic hexamers into pentagonal pyramids in the curved apical membrane regions.

NATURE COMMUNICATIONS (2021)

Article Multidisciplinary Sciences

Highly accurate protein structure prediction with AlphaFold

John Jumper et al.

Summary: Proteins are essential for life, and accurate prediction of their structures is a crucial research problem. Current experimental methods are time-consuming, highlighting the need for accurate computational approaches to address the gap in structural coverage. Despite recent progress, existing methods fall short of atomic accuracy in protein structure prediction.

NATURE (2021)

Article Multidisciplinary Sciences

The six steps of the complete F1-ATPase rotary catalytic cycle

Meghna Sobti et al.

Summary: The study utilized cryo-electron microscopy to determine the structure of F-1-ATPase, revealing different conformational states during the catalytic cycle and providing a structural basis for the entire cycle.

NATURE COMMUNICATIONS (2021)

Article Multidisciplinary Sciences

Rotary catalysis of bovine mitochondrial F1-ATPase studied by single-molecule experiments

Ryohei Kobayashi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Biochemical Research Methods

Improvement of cryo-EM maps by density modification

Thomas C. Terwilliger et al.

NATURE METHODS (2020)

Article Biochemistry & Molecular Biology

Cryo-EM structure of the entire mammalian F-type ATP synthase

Gergely Pinke et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2020)

Article Multidisciplinary Sciences

Structure of the dimeric ATP synthase from bovine mitochondria

Tobias E. Spikes et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Type III ATP synthase is a symmetry-deviated dimer that induces membrane curvature through tetramerization

Rasmus Kock Flygaard et al.

NATURE COMMUNICATIONS (2020)

Article Biochemical Research Methods

Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction

Ali Punjani et al.

NATURE METHODS (2020)

Review Biochemistry & Molecular Biology

Structure and Mechanisms of F-Type ATP Synthases

Werner Kuehlbrandt

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 88 (2019)

Article Biology

Structure of a bacterial ATP synthase

Hui Guo et al.

Article Multidisciplinary Sciences

Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F1-Fo coupling

Bonnie J. Murphy et al.

SCIENCE (2019)

Article Biochemical Research Methods

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

Tristan Bepler et al.

NATURE METHODS (2019)

Article Chemistry, Multidisciplinary

A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis

Jasenko Zivanov et al.

Article Biochemistry & Molecular Biology

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

Thomas D. Goddard et al.

PROTEIN SCIENCE (2018)

Article Multidisciplinary Sciences

High-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane

Anurag P. Srivastava et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Structure, mechanism, and regulation of the chloroplast ATP synthase

Alexander Hahn et al.

SCIENCE (2018)

Article Biochemical Research Methods

ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps

Tristan Ian Croll

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2018)

Letter Biochemical Research Methods

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

Shawn Q. Zheng et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

Ali Punjani et al.

NATURE METHODS (2017)

Article Multidisciplinary Sciences

Perfect chemomechanical coupling of FoF1-ATP synthase

Naoki Soga et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Atomic model for the dimeric FO region of mitochondrial ATP synthase

Hui Guo et al.

SCIENCE (2017)

Article Biochemistry & Molecular Biology

The purification and characterization of ATP synthase complexes from the mitochondria of four fungal species

Sidong Liu et al.

BIOCHEMICAL JOURNAL (2015)

Article Biochemical Research Methods

EMRinger: side chain directed model and map validation for 3D cryo-electron microscopy

Benjamin A. Barad et al.

NATURE METHODS (2015)

Article Multidisciplinary Sciences

Comparison between single-molecule and X-ray crystallography data on yeast F1-ATPase

Bradley C. Steel et al.

SCIENTIFIC REPORTS (2015)

Article Biochemistry & Molecular Biology

Fabrication of carbon films with similar to 500 nm holes for cryo-EM with a direct detector device

Chelsea R. Marr et al.

JOURNAL OF STRUCTURAL BIOLOGY (2014)

Article Multidisciplinary Sciences

Anatomy of F1-ATPase powered rotation

James L. Martin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemistry & Molecular Biology

Spotlighting motors and controls of single FoF1-ATP synthase

Michael Boersch et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2013)

Article Biology

High-resolution single-molecule characterization of the enzymatic states in Escherichia coli F1-ATPase

Thomas Bilyard et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Article Biochemistry & Molecular Biology

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

Sjors H. W. Scheres

JOURNAL OF STRUCTURAL BIOLOGY (2012)

Article Biochemical Research Methods

MolProbity: all-atom structure validation for macromolecular crystallography

Vincent B. Chen et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)

Article Biochemical Research Methods

PHENIX: a comprehensive Python-based system for macromolecular structure solution

Paul D. Adams et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)

Review Multidisciplinary Sciences

Torque generation and elastic power transmission in the rotary F0F1-ATPase

Wolfgang Junge et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Cryo-EM Structure of the Yeast ATP Synthase

Wilson C. Y. Lau et al.

JOURNAL OF MOLECULAR BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

Leonardo G. Trabuco et al.

STRUCTURE (2008)

Article Biochemistry & Molecular Biology

Ground state structure of F1-ATPase from bovine heart mitochondria at 1.9 a resolution

Matthew W. Bowler et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Biochemistry & Molecular Biology

Novel features of the rotary catalytic mechanism revealed in the structure of yeast F1 ATPase

Venkataraman Kabaleeswaran et al.

EMBO JOURNAL (2006)

Article Biochemistry & Molecular Biology

ATP synthase from Saccharomyces cerevisiae:: Location of subunit h in the peripheral stalk region

JL Rubinstein et al.

JOURNAL OF MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation

T Nishizaka et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)

Article Biochemical Research Methods

Coot:: model-building tools for molecular graphics

P Emsley et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)

Article Chemistry, Multidisciplinary

UCSF chimera - A visualization system for exploratory research and analysis

EF Pettersen et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

Structure of the mitochondrial ATP synthase by electron cryomicroscopy

JL Rubinstein et al.

EMBO JOURNAL (2003)

Article Biochemistry & Molecular Biology

ATP synthase from Saccharomyces cerevisiae:: Location of the OSCP subunit in the peripheral stalk region

JL Rubinstein et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

Pause and rotation of F1-ATPase during catalysis

Y Hirono-Hara et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Biochemistry & Molecular Biology

Inter-subunit rotation and elastic power transmission in F0F1-ATPase

W Junge et al.

FEBS LETTERS (2001)