相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization
Hannah Schmidbaur et al.
NATURE COMMUNICATIONS (2022)
Phylogenomic analyses recover a clade of large-bodied decapodiform cephalopods
Frank E. Anderson et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2021)
The genome of Nautilus pompilius illuminates eye evolution and biomineralization
Yang Zhang et al.
NATURE ECOLOGY & EVOLUTION (2021)
Adaptive Proteome Diversification by Nonsynonymous A-to-I RNA Editing in Coleoid Cephalopods
Yoav Shoshan et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Synaptic Specificity, Recognition Molecules, and Assembly of Neural Circuits
Joshua R. Sanes et al.
CELL (2020)
A draft genome sequence of the elusive giant squid, Architeuthis dux
Rute R. da Fonseca et al.
GIGASCIENCE (2020)
RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Deeply conserved synteny resolves early events in vertebrate evolution
Oleg Simakov et al.
NATURE ECOLOGY & EVOLUTION (2020)
Highly Efficient Knockout of a Squid Pigmentation Gene
Karen Crawford et al.
CURRENT BIOLOGY (2020)
Adaptive evolution at mRNA editing sites in soft-bodied cephalopods
Mikhail Moldovan et al.
PEERJ (2020)
Molecular Basis of Chemotactile Sensation in Octopus
Lena van Giesen et al.
CELL (2020)
Construction and Composition of the Squid Pen from Doryteuthis pealeii
Mark A. Messerli et al.
BIOLOGICAL BULLETIN (2019)
The preponderance of nonsynonymous A-to-I RNA editing in coleoids is nonadaptive
Daohan Jiang et al.
NATURE COMMUNICATIONS (2019)
Male Alternative Reproductive Tactics and Associated Evolution of Anatomical Characteristics in Loliginid Squid
Jose E. A. R. Marian et al.
FRONTIERS IN PHYSIOLOGY (2019)
A chromosomal-level genome assembly for the giant African snail Achatina fulica
Yunhai Guo et al.
GIGASCIENCE (2019)
Symbiotic organs shaped by distinct modes of genome evolution in cephalopods
Mahdi Belcaid et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
In silico Identification and Expression of Protocadherin Gene Family in Octopus vulgaris
Ruth Styfhals et al.
FRONTIERS IN PHYSIOLOGY (2019)
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Diep Thi Hoang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Cephalopod Brains: An Overview of Current Knowledge to Facilitate Comparison With Vertebrates
Shuichi Shigeno et al.
FRONTIERS IN PHYSIOLOGY (2018)
Karyotype Evolution in Birds: From Conventional Staining to Chromosome Painting
Rafael Kretschmer et al.
GENES (2018)
The Proof Is in the Pidan: Generalizing Proteins as Patchy Particles
Jing Cai et al.
ACS CENTRAL SCIENCE (2018)
Cephalopod biology and care, a COST FA1301 (CephsInAction) training school: anaesthesia and scientific procedures
Vanessa M. Lopes et al.
INVERTEBRATE NEUROSCIENCE (2017)
Dynamic landscape and regulation of RNA editing in mammals
Meng How Tan et al.
NATURE (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution
Alastair R. Tanner et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
Restricting retrotransposons: ADAR1 is another guardian of the human genome
Elisa Orecchini et al.
RNA BIOLOGY (2017)
Eye patches: Protein assembly of index-gradient squid lenses
J. Cai et al.
SCIENCE (2017)
Cadherin genes and evolutionary novelties in the octopus
Z. Yan Wang et al.
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2017)
Scallop genome provides insights into evolution of bilaterian karyotype and development
Shi Wang et al.
NATURE ECOLOGY & EVOLUTION (2017)
Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods
Noa Liscovitch-Brauer et al.
CELL (2017)
Peripheral injury alters schooling behavior in squid, Doryteuthis pealeii
Megumi Oshima et al.
BEHAVIOURAL PROCESSES (2016)
γ-Protocadherin structural diversity and functional implications
Kerry Marie Goodman et al.
ELIFE (2016)
Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions
Rotem Rubinstein et al.
CELL (2015)
The emerging role of RNA editing in plasticity
Joshua J. C. Rosenthal
JOURNAL OF EXPERIMENTAL BIOLOGY (2015)
Guidelines for the Care and Welfare of Cephalopods in Research -A consensus based on an initiative by CephRes, FELASA and the Boyd Group
Graziano Fiorito et al.
LABORATORY ANIMALS (2015)
The octopus genome and the evolution of cephalopod neural and morphological novelties
Caroline B. Albertin et al.
NATURE (2015)
Infiltration of chitin by protein coacervates defines the squid beak mechanical gradient
YerPeng Tan et al.
NATURE CHEMICAL BIOLOGY (2015)
The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing
Shahar Alon et al.
ELIFE (2015)
Nanoconfined β-Sheets Mechanically Reinforce the Supra-Biomolecular Network of Robust Squid Sucker Ring Teeth
Paul A. Guerette et al.
ACS NANO (2014)
AliView: a fast and lightweight alignment viewer and editor for large datasets
Anders Larsson
BIOINFORMATICS (2014)
Molecular cytogenetic study in Octopus (Amphioctopus) areolatus from Japan
Kenta Adachi et al.
FISHERIES SCIENCE (2014)
Cephalopods in neuroscience: regulations, research and the 3Rs
Graziano Fiorito et al.
INVERTEBRATE NEUROSCIENCE (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
Joshua N. Burton et al.
NATURE BIOTECHNOLOGY (2013)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
A brief historical perspective: Hodgkin and Huxley
Christof J. Schwiening
JOURNAL OF PHYSIOLOGY-LONDON (2012)
RNA Editing Underlies Temperature Adaptation in K+ Channels from Polar Octopuses
Sandra Garrett et al.
SCIENCE (2012)
Cephalopod origin and evolution: A congruent picture emerging from fossils, development and molecules
Bjoern Kroeger et al.
BIOESSAYS (2011)
Comparative Analysis of Chromosome Counts Infers Three Paleopolyploidies in the Mollusca
Nathaniel M. Hallinan et al.
GENOME BIOLOGY AND EVOLUTION (2011)
A highly distributed Bragg stack with unique geometry provides effective camouflage for Loliginid squid eyes
Amanda L. Holt et al.
JOURNAL OF THE ROYAL SOCIETY INTERFACE (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Functions and Regulation of RNA Editing by ADAR Deaminases
Kazuko Nishikura
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)
Chemoaffinity Revisited: Dscams, Protocadherins, and Neural Circuit Assembly
S. Lawrence Zipursky et al.
CELL (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
An extra double-stranded RNA binding domain confers high activity to a squid RNA editing enzyme
Juan Pablo Palavicini et al.
RNA (2009)
Recent developments in the MAFFT multiple sequence alignment program
Kazutaka Katoh et al.
BRIEFINGS IN BIOINFORMATICS (2008)
The amphioxus genome and the evolution of the chordate karyotype
Nicholas H. Putnam et al.
NATURE (2008)
Opinion - Transposable elements and the evolution of regulatory networks
Cedric Feschotte
NATURE REVIEWS GENETICS (2008)
Evolution of graded refractive index in squid lenses
Alison M. Sweeney et al.
JOURNAL OF THE ROYAL SOCIETY INTERFACE (2007)
Ocean climate effects on the relative abundance of short-finned (Illex illecebrosus) and long-finned (Loligo pealeii) squid in the northwest Atlantic Ocean
E. G. Dawe et al.
FISHERIES OCEANOGRAPHY (2007)
Oligomerization of EDEN-BP is required for specific mRNA deadenylation and binding
Bertrand Cosson et al.
BIOLOGY OF THE CELL (2006)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Reflectins: The unusual proteins of squid reflective tissues
WJ Crookes et al.
SCIENCE (2004)
Widespread RNA editing of embedded Alu elements in the human transcriptome
DDY Kim et al.
GENOME RESEARCH (2004)
Systematic identification of abundant A-to-I editing sites in the human transcriptome
EY Levanon et al.
NATURE BIOTECHNOLOGY (2004)
A survey of RNA editing in human brain
M Blow et al.
GENOME RESEARCH (2004)
Widespread A-to-I RNA editing of alu-containing mRNAs in the human transcriptome
A Athanasiadis et al.
PLOS BIOLOGY (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
MJ Sanderson
BIOINFORMATICS (2003)
Extensive editing of mRNAs for the squid delayed rectifier K+ channel regulates subunit tetramerization
JJC Rosenthal et al.
NEURON (2002)
Computational inference of homologous gene structures in the human genome
RF Yeh et al.
GENOME RESEARCH (2001)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Ab initio gene finding in Drosophila genomic DNA
AA Salamov et al.
GENOME RESEARCH (2000)