4.8 Article

Gasdermin-A3 pore formation propagates along variable pathways

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biology

Native-like membrane models of E. coli polar lipid extract shed light on the importance of lipid composition complexity

Kristyna Pluhackova et al.

Summary: The study prepared four membrane models of E. coli polar lipid extract to demonstrate the importance of lipid tail complexity in stabilizing membrane properties and laying a solid foundation for future realistic lipid membrane simulation studies.

BMC BIOLOGY (2021)

Article Multidisciplinary Sciences

Gasdermin D pore structure reveals preferential release of mature interleukin-1

Shiyu Xia et al.

Summary: Inflammasomes activate caspase-1 to cleave GSDMD and generate mature cytokines like IL-1 beta and IL-18, which are released through pores formed by GSDMD. The GSDMD pore mediates IL-1 release by electrostatic filtering, favoring the passage of mature cytokines over their precursors.

NATURE (2021)

Article Biochemical Research Methods

Martini 3: a general purpose force field for coarse-grained molecular dynamics

Paulo C. T. Souza et al.

Summary: The refined Martini 3 model offers improved interaction balance and expanded ability to include specific interactions, allowing for more accurate predictions of molecular packing and interactions. It has been successfully applied in a wide range of applications, demonstrating its versatility and effectiveness in biomolecular simulations.

NATURE METHODS (2021)

Review Immunology

Caspases in Cell Death, Inflammation, and Pyroptosis

Sannula Kesavardhana et al.

ANNUAL REVIEW OF IMMUNOLOGY, VOL 38 (2020)

Letter Multidisciplinary Sciences

Opening of smaller toxin pores by lipid micelle formation

Rajat Desikan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Gasdermin E suppresses tumour growth by activating anti-tumour immunity

Zhibin Zhang et al.

NATURE (2020)

Article Multidisciplinary Sciences

A bioorthogonal system reveals antitumour immune function of pyroptosis

Qinyang Wang et al.

NATURE (2020)

Review Immunology

The gasdermins, a protein family executing cell death and inflammation

Petr Broz et al.

NATURE REVIEWS IMMUNOLOGY (2020)

Review Immunology

Caspases in Cell Death, Inflammation, and Disease

Nina Van Opdenbosch et al.

IMMUNITY (2019)

Article Multidisciplinary Sciences

Membrane perforation by the pore-forming toxin pneumolysin

Martin Voegele et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Oncology

Gasdermins: novel mitochondrial pore-forming proteins

Corey Rogers et al.

MOLECULAR & CELLULAR ONCOLOGY (2019)

Editorial Material Biochemistry & Molecular Biology

Growing a gasdermin pore in membranes of pyroptotic cells

Jingjin Ding et al.

EMBO JOURNAL (2018)

Article Biochemistry & Molecular Biology

Mechanism of membrane pore formation by human gasdermin-D

Estefania Mulvihill et al.

EMBO JOURNAL (2018)

Review Biochemistry & Molecular Biology

Mechanisms of Gasdermin Family Members in Inflammasome Signaling and Cell Death

Shouya Feng et al.

JOURNAL OF MOLECULAR BIOLOGY (2018)

Article Multidisciplinary Sciences

Cryo-EM structure of the gasdermin A3 membrane pore

Jianbin Ruan et al.

NATURE (2018)

Article Biochemical Research Methods

CHARMM36m: an improved force field for folded and intrinsically disordered proteins

Jing Huang et al.

NATURE METHODS (2017)

Article Chemistry, Physical

Critical Comparison of Biomembrane Force Fields: Protein-Lipid Interactions at the Membrane Interface

Angelica Sandoval-Perez et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2017)

Article Multidisciplinary Sciences

Chemotherapy drugs induce pyroptosis through caspase-3 cleavage of a gasdermin

Yupeng Wang et al.

NATURE (2017)

Review Nanoscience & Nanotechnology

Imaging modes of atomic force microscopy for application in molecular and cell biology

Yves F. Dufrene et al.

NATURE NANOTECHNOLOGY (2017)

Article Biochemistry & Molecular Biology

Giant MACPF/CDC pore forming toxins: A class of their own

Cyril F. Reboul et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2016)

Article Computer Science, Interdisciplinary Applications

Martini straight: Boosting performance using a shorter cutoff and GPUs

Djurre H. de Jong et al.

COMPUTER PHYSICS COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

Bax assembly into rings and arcs in apoptotic mitochondria is linked to membrane pores

Raquel Salvador-Gallego et al.

EMBO JOURNAL (2016)

Article Biochemistry & Molecular Biology

GSDMD membrane pore formation constitutes the mechanism of pyroptotic cell death

Lorenzo Sborgi et al.

EMBO JOURNAL (2016)

Article Chemistry, Physical

A Critical Comparison of Biomembrane Force Fields: Structure and Dynamics of Model DMPC, POPC, and POPE Bilayers

Kristyna Pluhackova et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2016)

Article Chemistry, Multidisciplinary

Unraveling the Pore-Forming Steps of Pneumolysin from Streptococcus pneumoniae

Katharina van Pee et al.

NANO LETTERS (2016)

Article Multidisciplinary Sciences

Pore-forming activity and structural autoinhibition of the gasdermin family

Jingjin Ding et al.

NATURE (2016)

Article Multidisciplinary Sciences

Inflammasome-activated gasdermin D causes pyroptosis by forming membrane pores

Xing Liu et al.

NATURE (2016)

Article Multidisciplinary Sciences

GsdmD p30 elicited by caspase-11 during pyroptosis forms pores in membranes

Robin A. Aglietti et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemistry & Molecular Biology

Loss of conserved Gsdma3 self-regulation causes autophagy and cell death

Peiliang Shi et al.

BIOCHEMICAL JOURNAL (2015)

Article Chemistry, Physical

High-Throughput Simulations of Dimer and Trimer Assembly of Membrane Proteins. The DAFT Approach

Tsjerk A. Wassenaar et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)

Article Chemistry, Physical

Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations

Tsjerk A. Wassenaar et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)

Editorial Material Multidisciplinary Sciences

IMMUNOLOGY Caspase target drives pyroptosis

Petr Broz

NATURE (2015)

Article Multidisciplinary Sciences

Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling

Nobuhiko Kayagaki et al.

NATURE (2015)

Article Multidisciplinary Sciences

Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death

Jianjin Shi et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

Perforin oligomers form arcs in cellular membranes: a locus for intracellular delivery of granzymes

S. S. Metkar et al.

CELL DEATH AND DIFFERENTIATION (2015)

Article Chemistry, Physical

Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models

Tsjerk A. Wassenaar et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)

Article Biochemical Research Methods

Multiparametric high-resolution imaging of native proteins by force-distance curve-based AFM

Moritz Pfreundschuh et al.

NATURE PROTOCOLS (2014)

Article Biochemistry & Molecular Biology

Incomplete pneumolysin oligomers form membrane pores

Andreas F. -P. Sonnen et al.

OPEN BIOLOGY (2014)

Article Computer Science, Interdisciplinary Applications

A flexible algorithm for calculating pair interactions on SIMD architectures

Szilard Pall et al.

COMPUTER PHYSICS COMMUNICATIONS (2013)

Review Biochemical Research Methods

Multiparametric imaging of biological systems by force-distance curve-based AFM

Yves F. Dufrene et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

Human Perforin Employs Different Avenues to Damage Membranes

Tilen Praper et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Editorial Material Biochemistry & Molecular Biology

Cell Membranes: The Lipid Perspective

Uenal Coskun et al.

STRUCTURE (2011)

Article Chemistry, Physical

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

Jeffery B. Klauda et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2010)

Review Multidisciplinary Sciences

Lipid Rafts As a Membrane-Organizing Principle

Daniel Lingwood et al.

SCIENCE (2010)

Article Chemistry, Physical

P-LINCS: A parallel linear constraint solver for molecular simulation

Berk Hess

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)

Article Biochemical Research Methods

Atomic force microscopy and spectroscopy of native membrane proteins

Daniel J. Mueller et al.

NATURE PROTOCOLS (2007)

Article Multidisciplinary Sciences

The domains of a cholesterol-dependent cytolysin undergo a major FRET-detected rearrangement during pore formation

R Ramachandran et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Structural basis of pore formation by the bacterial toxin pneumolysin

SJ Tilley et al.

Article Biochemistry & Molecular Biology

Vertical collapse of a cytolysin prepore moves its transmembrane β-hairpins to the membrane

DM Czajkowsky et al.

EMBO JOURNAL (2004)