相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Quorum Sensing Regulation in Phytopathogenic Bacteria
Julie Baltenneck et al.
MICROORGANISMS (2021)
A computational system for identifying operons based on RNA-seq data
Brian Tjaden
METHODS (2020)
Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification
Matthew T. Parker et al.
ELIFE (2020)
Evaluating the genome and resistome of extensively drug-resistant Klebsiella pneumoniae using native DNA and RNA Nanopore sequencing
Miranda E. Pitt et al.
GIGASCIENCE (2020)
Advances in bacterial transcriptome understanding: From overlapping transcription to the excludon concept
Alejandro Toledo-Arana et al.
MOLECULAR MICROBIOLOGY (2020)
How the assembly and protection of the bacterial cell envelope depend on cysteine residues
Jean-Francois Collet et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2020)
Redefining fundamental concepts of transcription initiation in bacteria
Citlalli Mejia-Almonte et al.
NATURE REVIEWS GENETICS (2020)
RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases
Marco Di Salvo et al.
BMC BIOINFORMATICS (2019)
Tuning the sequence specificity of a transcription terminator
Michael R. Lawson et al.
CURRENT GENETICS (2019)
Emergence of apple bacterial quick decline caused by Dickeya dadantii in Japan
Takashi Fujikawa et al.
JOURNAL OF GENERAL PLANT PATHOLOGY (2019)
Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen
Daniel P. Depledge et al.
NATURE COMMUNICATIONS (2019)
The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity
Alexandre Duprey et al.
ENVIRONMENTAL MICROBIOLOGY (2019)
Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling
Bilal El Houdaigui et al.
NUCLEIC ACIDS RESEARCH (2019)
Regulation of Bacterial Gene Expression by Transcription Attenuation
Charles L. Turnbough
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2019)
APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data
Simon Leonard et al.
NUCLEIC ACIDS RESEARCH (2019)
Full-length RNA profiling reveals pervasive bidirectional transcription terminators in bacteria
Xiangwu Ju et al.
NATURE MICROBIOLOGY (2019)
Nanopore native RNA sequencing of a human poly(A) transcriptome
Rachael E. Workman et al.
NATURE METHODS (2019)
Noncontiguous operon is a genetic organization for coordinating bacterial gene expression
S. Saenz-Lahoya et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Transcriptome analysis of the Dickeya dadantii PecS regulon during the early stages of interaction with Arabidopsis thaliana
Jacques Pedron et al.
MOLECULAR PLANT PATHOLOGY (2018)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
NanoPack: visualizing and processing long-read sequencing data
Wouter De Coster et al.
BIOINFORMATICS (2018)
Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D
Piroon Jenjaroenpun et al.
NUCLEIC ACIDS RESEARCH (2018)
SMRT-Cappable-seq reveals complex operon variants in bacteria
Bo Yan et al.
NATURE COMMUNICATIONS (2018)
Specific structural elements of the T-box riboswitch drive the two-step binding of the tRNA ligand
Jiacheng Zhang et al.
ELIFE (2018)
The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence
Indu Warrier et al.
PLOS PATHOGENS (2018)
bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli
Ilham Ayub Shahmuradov et al.
BIOINFORMATICS (2017)
Computational prediction of regulatory, premature transcription termination in bacteria
Adi Millman et al.
NUCLEIC ACIDS RESEARCH (2017)
Modular Organization of the NusA- and NusG-Stimulated RNA Polymerase Pause Signal That Participates in the Bacillus subtilis trp Operon Attenuation Mechanism
Smarajit Mondal et al.
JOURNAL OF BACTERIOLOGY (2017)
Mechanisms of Bacterial Transcription Termination: All Good Things Must End
Ananya Ray-Soni et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 85 (2016)
Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection
Xuejiao Jiang et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Genome wide transcription start sites analysis of Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan
Rabeaa S. Alkhateeb et al.
JOURNAL OF BIOTECHNOLOGY (2016)
First Report of Dickeya dianthicola Causing Blackleg and Bacterial Soft Rot on Potato in Maine
H. H. Jiang et al.
PLANT DISEASE (2016)
Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation
Ivan Junier et al.
PLOS ONE (2016)
Virulence Program of a Bacterial Plant Pathogen: The Dickeya Model
S. Reverchon et al.
HOST-MICROBE INTERACTIONS (2016)
Clustering Algorithms: Their Application to Gene Expression Data
Jelili Oyelade et al.
BIOINFORMATICS AND BIOLOGY INSIGHTS (2016)
Recent functional insights into the role of (p)ppGpp in bacterial physiology
Vasili Hauryliuk et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Insights into transcription termination of Hfq-binding sRNAs of Escherichia coli and characterization of readthrough products
Teppei Morita et al.
RNA (2015)
Chromosomal Stress-Response Domains Govern the Spatiotemporal Expression of the Bacterial Virulence Program
Xuejiao Jiang et al.
MBIO (2015)
Riboswitches in regulation of Rho-dependent transcription termination
Sergey Proshkin et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2014)
TSSer: an automated method to identify transcription start sites in prokaryotic genomes from differential RNA sequencing data
Hadi Jorjani et al.
BIOINFORMATICS (2014)
Differential RNA-seq: the approach behind and the biological insight gained
Cynthia M. Sharma et al.
CURRENT OPINION IN MICROBIOLOGY (2014)
Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon
Anne M. Stringer et al.
JOURNAL OF BACTERIOLOGY (2014)
The double-stranded transcriptome of Escherichia coli
Meghan Lybecker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing
Tyrrell Conway et al.
MBIO (2014)
Iron/sulfur proteins biogenesis in prokaryotes: Formation, regulation and diversity
Beatrice Roche et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2013)
Terminator still moving forward: expanding roles for Rho factor
Marc Boudvillain et al.
CURRENT OPINION IN MICROBIOLOGY (2013)
Vfm a new quorum sensing system controls the virulence of Dickeya dadantii
William Nasser et al.
ENVIRONMENTAL MICROBIOLOGY (2013)
The excludon: a new concept in bacterial antisense RNA-mediated gene regulation
Nina Sesto et al.
NATURE REVIEWS MICROBIOLOGY (2013)
Alternative splicing: a pivotal step between eukaryotic transcription and translation
Alberto R. Kornblihtt et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2013)
High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis
Swapna Uplekar et al.
NUCLEIC ACIDS RESEARCH (2013)
Dickeya ecology, environment sensing and regulation of virulence programme
Sylvie Reverchon et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2013)
High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates
Gaurav Dugar et al.
PLOS GENETICS (2013)
Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions
Cornelius Schmidtke et al.
NUCLEIC ACIDS RESEARCH (2012)
The nucleoid-associated proteins H-NS and FIS modulate the DNA supercoiling response of the pel genes, the major virulence factors in the plant pathogen bacterium Dickeya dadantii
Zghidi-Abouzid Ouafa et al.
NUCLEIC ACIDS RESEARCH (2012)
First Report of Bacterial Foot Rot of Rice Caused by a Dickeya zeae in China.
X. M. Pu et al.
PLANT DISEASE (2012)
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
Carsten Kroeger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis
Pierre Nicolas et al.
SCIENCE (2012)
Escherichia coli glycogen genes are organized in a single glgBXCAP transcriptional unit possessing an alternative suboperonic promoter within glgC that directs glgAP expression
Manuel Montero et al.
BIOCHEMICAL JOURNAL (2011)
Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq
Yi Wang et al.
BMC GENOMICS (2011)
Genome Sequence of the Plant-Pathogenic Bacterium Dickeya dadantii 3937
Jeremy D. Glasner et al.
JOURNAL OF BACTERIOLOGY (2011)
Dickeya species: an emerging problem for potato production in Europe
I. K. Toth et al.
PLANT PATHOLOGY (2011)
ARNold A web tool for the prediction of Rho-independent transcription terminators
Magali Naville et al.
RNA BIOLOGY (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Cyt toxin expression reveals an inverse regulation of insect and plant virulence factors of Dickeya dadantii
Denis Costechareyre et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
The T box mechanism: tRNA as a regulatory molecule
Nicholas J. Green et al.
FEBS LETTERS (2010)
Genome-Wide Identification of HrpL-Regulated Genes in the Necrotrophic Phytopathogen Dickeya dadantii 3937
Shihui Yang et al.
PLOS ONE (2010)
Transcriptome Complexity in a Genome-Reduced Bacterium
Marc Gueell et al.
SCIENCE (2009)
Synthetic biology: discovering new worlds and new words - The new and not so new aspects of this emerging research field
Victor de Lorenzo et al.
EMBO REPORTS (2008)
The GacA global regulator is required for the appropriate expression of Erwinia chrysanthemi 3937 pathogenicity genes during plant infection
Aurore Lebeau et al.
ENVIRONMENTAL MICROBIOLOGY (2008)
PecS Is a Global Regulator of the Symptomatic Phase in the Phytopathogenic Bacterium Erwinia chrysanthemi 3937
Florence Hommais et al.
JOURNAL OF BACTERIOLOGY (2008)
Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia
Goro Kikuchi et al.
PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES (2008)
Identification of the L,D-transpeptidases responsible for attachment of the Braun lipoprotein to Escherichia coli peptidoglycan
Sophie Magnet et al.
JOURNAL OF BACTERIOLOGY (2007)
Host range and molecular Phylogenies of the soft rot enterobacterial genera Pectobacterium and dickeya
Bing Ma et al.
PHYTOPATHOLOGY (2007)
Regulation of the type III secretion system in phytopathogenic bacteria
Xiaoyan Tang et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2006)
Transcription attenuation: a highly conserved regulatory strategy used by bacteria
E Merino et al.
TRENDS IN GENETICS (2005)
SufC: an unorthodox cytoplasmic ABC/ATPase required for [Fe-S] biogenesis under oxidative stress
L Nachin et al.
EMBO JOURNAL (2003)
EnvZ-OmpR interaction and osmoregulation in Escherichia coli
SJ Cai et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Control of intrinsic transcription termination by N and NusA: The basic mechanisms
I Gusarov et al.
CELL (2001)
The zinc-responsive regulator Zur and its control of the znu gene cluster encoding the ZnuABC zinc uptake system in Escherichia coli
SI Patzer et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)