4.5 Article

Delineation of Paraburkholderia tuberum sensu stricto and description of Paraburkholderia podalyriae sp. nov. nodulating the South African legume Podalyria calyptrata

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Paraburkholderia youngii sp. nov. and 'Paraburkholderia atlantica' - Brazilian and Mexican Mimosa-associated rhizobia that were previously known as Paraburkholderia tuberum sv. mimosae

Lazarus Mavima et al.

Summary: This study focuses on 30 Paraburkholderia strains isolated from the root nodules of Mimosa species in Brazil and Mexico. Using a polyphasic approach, these strains were delineated into two distinct groups, with one being conspecific with an existing species and the other proposed as a new species, Paraburkholderia youngii sp. nov.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2021)

Review Agronomy

The history and distribution of nodulating Paraburkholderia, a potential inoculum for Fynbos forage species

Chrizelle W. Beukes et al.

Summary: Legumes in the Fynbos vegetation of the Western Cape of South Africa show unique relationships with diverse and unique rhizobia, particularly with the genus Paraburkholderia. Understanding the origins and distribution factors of these symbionts is essential for successful adaptation and nodulation of these legumes in Agriculture globally.

GRASS AND FORAGE SCIENCE (2021)

Review Microbiology

Twenty years of paradigm-breaking studies of taxonomy and symbiotic nitrogen fixation by beta-rhizobia, and indication of Brazil as a hotspot of Paraburkholderia diversity

Fabiane Paulitsch et al.

Summary: Twenty years ago, beta-proteobacteria capable of nodulating and fixing N-2 during symbiosis with leguminous plants were discovered, challenging the long-standing belief that all rhizobia belonged exclusively to the alpha-Proteobacteria class. Through large-scale phylogenomic and taxonomic studies, clinically important and phytopathogenic members of Burkholderia have been separated from environmental ones.

ARCHIVES OF MICROBIOLOGY (2021)

Article Microbiology

Nodulation of the neotropical genus Calliandra by alpha or betaproteobacterial symbionts depends on the biogeographical origins of the host species

Jerri Edson Zilli et al.

Summary: The neotropical genus Calliandra is important for ecology and agroforestry, but little is known about its nodulation or rhizobia. Through studying species from different regions, it was found that Calliandra nodules have typical anatomy but symbionts vary according to geographical origin, affecting the species' preferences and symbiotic relationships.

BRAZILIAN JOURNAL OF MICROBIOLOGY (2021)

Article Biotechnology & Applied Microbiology

A complete domain-to-species taxonomy for Bacteria and Archaea

Donovan H. Parks et al.

NATURE BIOTECHNOLOGY (2020)

Article Biotechnology & Applied Microbiology

Phylogeny of symbiotic genes reveals symbiovars within legume-nodulating Paraburkholderia species

Fabiane Paulitsch et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2020)

Article Microbiology

Paraburkholderia strydomiana sp. nov. and Paraburkholderia steynii sp. nov.: rhizobial symbionts of the fynbos legume Hypocalyptus sophoroides

Chrizelle W. Beukes et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2019)

Review Microbiology

Minimal standards for the description of new genera and species of rhizobia and agrobacteria

Philippe M. de Lajudie et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)

Article Microbiology

Both Alpha- and Beta-Rhizobia Occupy the Root Nodules of Vachellia karroo in South Africa

Chrizelle W. Beukes et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Biotechnology & Applied Microbiology

Burkholderia and Paraburkholderia are Predominant Soybean Rhizobial Genera in Venezuelan Soils in Different Climatic and Topographical Regions

Maria Daniela Artigas Ramirez et al.

MICROBES AND ENVIRONMENTS (2019)

Article Biochemistry & Molecular Biology

UFBoot2: Improving the Ultrafast Bootstrap Approximation

Diep Thi Hoang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Review Plant Sciences

Symbiotic nitrogen fixation by rhizobia - the roots of a success story

Catherine Masson-Boivin et al.

CURRENT OPINION IN PLANT BIOLOGY (2018)

Review Microbiology

LPSN - List of Prokaryotic names with Standing in Nomenclature (bacterio.net), 20 years on

Aidan C. Parte

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Microbiology

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

Jongsik Chun et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Plant Sciences

Horizontal gene transfer among rhizobia of the Core Cape Subregion of southern Africa

M. N. Dludlu et al.

SOUTH AFRICAN JOURNAL OF BOTANY (2018)

Article Biotechnology & Applied Microbiology

Brazilian species of Calliandra Benth. (tribe Ingeae) are nodulated by diverse strains of Paraburkholderia

Veronica Cordeiro Silva et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2018)

Article Biotechnology & Applied Microbiology

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

Donovan H. Parks et al.

NATURE BIOTECHNOLOGY (2018)

Article Microbiology

Paraburkholderia piptadeniae sp nov and Paraburkholderia ribeironis sp nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil

Caroline Bournaud et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)

Article Biochemical Research Methods

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy et al.

NATURE METHODS (2017)

Article Genetics & Heredity

Draft genome sequences of Bradyrhizobium shewense sp nov ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T

Aregu Amsalu Aserse et al.

STANDARDS IN GENOMIC SCIENCES (2017)

Article Microbiology

Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

Chrizelle W. Beukes et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Microbiology

Practically delineating bacterial species with genealogical concordance

Stephanus N. Venter et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2017)

Article Plant Sciences

Endemic Mimosa species from Mexico prefer alphaproteobacterial rhizobial symbionts

Cyril Bontemps et al.

NEW PHYTOLOGIST (2016)

Article Biotechnology & Applied Microbiology

Biogeographical Patterns of Legume-Nodulating Burkholderia spp.: from African Fynbos to Continental Scales

Benny Lemaire et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)

Article Biochemistry & Molecular Biology

Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes

Sofie E. De Meyer et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2016)

Article Biochemistry & Molecular Biology

GenBank

Dennis A. Benson et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Microbiology

Burkholderia dipogonis sp nov., isolated from root nodules of Dipogon lignosus in New Zealand and Western Australia

Shih-Yi Sheu et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)

Article Microbiology

Burkholderia susongensis sp nov., a mineral-weathering bacterium isolated from weathered rock surface

Jia-Yu Gu et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Burkholderia kirstenboschensis sp nov nodulates papilionoid legumes indigenous to South Africa

Emma T. Steenkamp et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2015)

Article Microbiology

Burkholderia monticola sp nova, isolated from mountain soil

Inwoo Baek et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Microbiology

Burkholderia dilworthii sp nov., isolated from Lebeckia ambigua root nodules

Sofie E. De Meyer et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)

Article Microbiology

Burkholderia aspalathi sp nov., isolated from root nodules of the South African legume Aspalathus abietina Thunb

Natasha R. Mavengere et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)

Article Biochemistry & Molecular Biology

Mosaic origins of Bradyrhizobium legume symbionts on the Caribbean island of Guadeloupe

Matthew A. Parker et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

LPSN-list of prokaryotic names with standing in nomenclature

Aidan C. Parte

NUCLEIC ACIDS RESEARCH (2014)

Article Microbiology

Burkholderia caballeronis sp nov., a nitrogen fixing species isolated from tomato (Lycopersicon esculentum) with the ability to effectively nodulate Phaseolus vulgaris

Lourdes Martinez-Aguilar et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2013)

Article Biochemical Research Methods

Genome sequence-based species delimitation with confidence intervals and improved distance functions

Jan P. Meier-Kolthoff et al.

BMC BIOINFORMATICS (2013)

Article Microbiology

Burkholderia diazotrophica sp nov., isolated from root nodules of Mimosa spp.

Shih-Yi Sheu et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)

Article Microbiology

Burkholderia rhynchosiae sp nov., isolated from Rhynchosia ferulifolia root nodules

Sofie E. De Meyer et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)

Article Microbiology

Azoarcus olearius sp nov., a nitrogen-fixing bacterium isolated from oil-contaminated soil

Ming-Hui Chen et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)

Article Microbiology

Burkholderia sprentiae sp nov., isolated from Lebeckia ambigua root nodules

Sofie E. De Meyer et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Microbiology

Complete Genome Sequences of Six Strains of the Genus Methylobacterium

Christopher J. Marx et al.

JOURNAL OF BACTERIOLOGY (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Legumes select symbiosis island sequence variants in Bradyrhizobium

Matthew A. Parker

MOLECULAR ECOLOGY (2012)

Article Biochemistry & Molecular Biology

Distinct Bradyrhizbium communities nodulate legumes native to temperate and tropical monsoon Australia

Tomasz Stepkowski et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)

Review Biochemistry & Molecular Biology

Legume-Nodulating Betaproteobacteria: Diversity, Host Range, and Future Prospects

Prasad Gyaneshwar et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2011)

Article Biochemistry & Molecular Biology

Burkholderia species are ancient symbionts of legumes

Cyril Bontemps et al.

MOLECULAR ECOLOGY (2010)

Article Biochemistry & Molecular Biology

FASconCAT: Convenient handling of data matrices

Patrick Kueck et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)

Article Microbiology

Expanded Multilocus Sequence Typing for Burkholderia Species

Theodore Spilker et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2009)

Article Multidisciplinary Sciences

Shifting the genomic gold standard for the prokaryotic species definition

Michael Richter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Microbiology

Burkholderia sabiae sp nov., isolated from root nodules of Mimosa caesalpiniifolia

Wen-Ming Chen et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2008)

Article Plant Sciences

Nodulation of Cyclopia spp. (Leguminosae, Papilionoideae) by Burkholderia tuberum

Geoffrey N. Elliott et al.

ANNALS OF BOTANY (2007)

Article Microbiology

Burkholderia nodosa sp nov., isolated from root nodules of the woody Brazilian legumes Mimosa bimucronata and Mimosa scabrella

Wen-Ming Chen et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Microbiology

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

Johan Goris et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Microbiology

Burkholderia ginsengisoli sp nov., a β-glucosidase-producing bacterium isolated from soil of a ginseng field

Ho-Bin Kim et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)

Article Microbiology

Burkholderia mimosarum sp nov., isolated from root nodules of Mimosa spp. from Taiwan and South America

Wen-Ming Chen et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)

Article Microbiology

Methylobacterium nodulans sp nov., for a group of aerobic, facultatively methylotrophic, legume root-nodule-forming and nitrogen-fixing bacteria

P Jourand et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)

Article Biotechnology & Applied Microbiology

Burkholderia tuberum sp nov and Burkholderia phymatum sp nov., nodulate the roots of tropical legumes

P Vandamme et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2002)

Article Biochemistry & Molecular Biology

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Multidisciplinary Sciences

Nodulation of legumes by members of the β-subclass of Proteobacteria

L Moulin et al.

NATURE (2001)

Article Microbiology

Burkholderia kururiensis sp nov., a trichloroethylene (TCE)-degrading bacterium isolated from an aquifer polluted with TCE

H Zhang et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)