4.5 Article

Unbiased approximation of posteriors via coupled particle Markov chain Monte Carlo

期刊

STATISTICS AND COMPUTING
卷 32, 期 3, 页码 -

出版社

SPRINGER
DOI: 10.1007/s11222-022-10093-3

关键词

Adaptive sequential Monte Carlo; Coupling; Embarrassingly parallel computing; Gaussian graphical model; Particle filter; Unbiased MCMC

资金

  1. Singapore Ministry of Education Academic Research Fund Tier 2 [MOE2019T2-2-100]
  2. Singapore National Research Foundation under its Translational and Clinical Research Flagship Programme
  3. Singapore Ministry of Health's National Medical Research Council [NMRC/TCR/004-NUS/2008, NMRC/TCR/012-NUHS/2014]
  4. Singapore Institute for Clinical Sciences, Agency for Science, Technology and Research

向作者/读者索取更多资源

Markov chain Monte Carlo (MCMC) is a powerful method for approximating posterior distributions. However, MCMC is not naturally compatible with modern highly parallel computing environments. In this study, we propose a new method that couples MCMC chains derived from sequential Monte Carlo (SMC) algorithms, achieving fully parallel unbiased Monte Carlo estimation. This method has desirable theoretical properties and can handle more challenging target distributions.
Markov chain Monte Carlo (MCMC) is a powerful methodology for the approximation of posterior distributions. However, the iterative nature of MCMC does not naturally facilitate its use with modern highly parallel computation on HPC and cloud environments. Another concern is the identification of the bias and Monte Carlo error of produced averages. The above have prompted the recent development of fully ('embarrassingly') parallel unbiased Monte Carlo methodology based on coupling of MCMC algorithms. A caveat is that formulation of effective coupling is typically not trivial and requires model-specific technical effort. We propose coupling of MCMC chains deriving from sequential Monte Carlo (SMC) by considering adaptive SMC methods in combination with recent advances in unbiased estimation for state-space models. Coupling is then achieved at the SMC level and is, in principle, not problem-specific. The resulting methodology enjoys desirable theoretical properties. A central motivation is to extend unbiased MCMC to more challenging targets compared to the ones typically considered in the relevant literature. We illustrate the effectiveness of the algorithm via application to two complex statistical models: (i) horseshoe regression; (ii) Gaussian graphical models.

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