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DNA Logic Circuits for Cancer Theranostics

SMALL (2022)

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Review Biotechnology & Applied Microbiology

Ultra-specific nucleic acid testing by target-activated nucleases

Jinyu Fu et al.

Summary: Detection of nucleic acids is crucial for clinical diagnostics and biotechnological applications, but the low concentration of targets in real samples often requires amplification steps. While amplification increases sensitivity, the lack of highly accurate precise strategies leads to significant false positives and false negatives. Nucleases with high catalytic activity have been explored for more specific and sensitive nucleic acid testing tools.

CRITICAL REVIEWS IN BIOTECHNOLOGY (2022)

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Review Chemistry, Multidisciplinary

Engineering DNA logic systems with non-canonical DNA-nanostructures: basic principles, recent developments and bio-applications

Daoqing Fan et al.

Summary: Engineering DNA logic systems is a promising strategy for next-generation molecular computers, with rapid developments but in need of a systematic review to elaborate principles and representative works.

SCIENCE CHINA-CHEMISTRY (2022)

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Article Chemistry, Analytical

Upconversion Luminescence-Controlled DNA Computation for Spatiotemporally Resolved, Multiplexed Molecular Imaging

Yongsheng Mi et al.

Summary: This study introduces a new approach for achieving high-precision DNA molecular computation using photonic nanocircuits, allowing spatial and temporal control in vitro and in vivo. Researchers designed a circuit that can track cancer biomarkers and output signals, as well as demonstrated a more complex gated circuit, showcasing the versatility and potential of the method.

ANALYTICAL CHEMISTRY (2021)

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Article Chemistry, Multidisciplinary

Optochemical Control of DNA-Switching Circuits for Logic and Probabilistic Computation

Xiewei Xiong et al.

Summary: Precise control of DNA-circuit functions is key for constructing complex DNA networks, and optochemically controlled DNA switching circuits can regulate computation functions, including multiple logic computations and probabilistic computation.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

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Article Chemistry, Multidisciplinary

An Enzyme-Activatable Engineered DNAzyme Sensor for Cell-Selective Imaging of Metal Ions

Deyu Yi et al.

Summary: Li et al. achieved cell-selective imaging of metal ions using an enzyme-activatable DNAzyme sensor technology, allowing differentiation of metal-ion signals in tumor cells from healthy cells both in vitro and in vivo.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

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Article Chemistry, Multidisciplinary

Molecular Identification of Tumor-Derived Extracellular Vesicles Using Thermophoresis-Mediated DNA Computation

Yike Li et al.

Summary: The study introduces a novel DNA computation device mediated by thermophoresis for detecting tEVs, achieving high sensitivity and specificity in analysis, providing new opportunities for cancer diagnosis.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)

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Article Chemistry, Multidisciplinary

A Photoresponsive Nanozyme for Synergistic Catalytic Therapy and Dual Phototherapy

Hailong Yang et al.

Summary: FePc/HNCSs possess peroxidase (POD) and catalase (CAT)-like activities, converting endogenous hydrogen peroxide (H2O2) into highly toxic hydroxyl radicals (OH) for catalytic therapy and decomposing H2O2 into oxygen (O-2) to enhance O-2-dependent PDT. Their enzyme-like activities are significantly enhanced under light irradiation, achieving a high tumor inhibition rate of 96.3% by combining with excellent photothermal effect.

SMALL (2021)

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Review Oncology

The Great Escape: The Power of Cancer Stem Cells to Evade Programmed Cell Death

Vanessa Castelli et al.

Summary: Cancer stem cells (CSCs) play a crucial role in tumor formation, progression, and recurrence, highlighting the importance of developing therapeutic approaches targeting CSCs selectively and inducing programmed cell death.

CANCERS (2021)

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Self-resetting molecular probes for nucleic acids detection enabled by fuel dissipative systems

Na Li et al.

Summary: The COVID-19 pandemic has had a significant impact on human health and the global economy. A self-resetting molecular probe has been developed using DNA nanotechnology to detect SARS-CoV-2 RNA repeatedly, with consistent signal amplitudes and fingerprint signals suitable for high confidential identifications of single-nucleotide variants. The probe also shows the ability to detect multiple human-infectious RNA viruses, enhancing screening capabilities for COVID-19 and other infectious diseases.

NANO TODAY (2021)

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Nuclease resistance of DNA nanostructures

Arun Richard Chandrasekaran

Summary: DNA nanotechnology has advanced from structural design to application-oriented research, facing challenges such as susceptibility to nuclease attack in biological applications. Recent strategies have been developed to enhance nuclease resistance of DNA nanostructures, with studies focusing on stability in biological fluids.

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Article Chemistry, Multidisciplinary

Engineering a Second-Order DNA Logic-Gated Nanorobot to Sense and Release on Live Cell Membranes for Multiplexed Diagnosis and Synergistic Therapy

Dan Wang et al.

Summary: This study introduces a novel DNA tetrahedral scaffold that can load multiple aptamers and therapeutics for precise and effective cancer therapy. The technology enables precise discrimination among different cell lines and synergistic killing of cancer cells through effector aptamer-tethered synergistic drugs.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

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Article Chemistry, Multidisciplinary

Cell Surface Engineering Using DNAzymes: Metal Ion Mediated Control of Cell-Cell Interactions

Ruo-Can Qian et al.

Summary: The strategy based on DNAzymes allows for controllable cell-cell interactions triggered by metal ions, effectively manipulating cell behaviors such as cell-cell conjunctions and disaggregation. This method has been successfully applied to control assembly and disassembly between two cell spheroids.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)

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Article Cell Biology

Small-molecule inhibition of APE1 induces apoptosis, pyroptosis, and necroptosis in non-small cell lung cancer

Kaili Long et al.

Summary: APE1 plays a critical role in NSCLC and its inhibitor NO.0449-0145 induces DNA damage and cell death, overcoming resistance to traditional chemotherapy in NSCLC cells. These findings highlight the therapeutic potential of targeting APE1 in NSCLC and developing small-molecule drugs for the treatment of other cancers.

CELL DEATH & DISEASE (2021)

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Article Chemistry, Analytical

Dual-Aptamer-Assisted AND Logic Gate for Cyclic Enzymatic Signal Amplification Electrochemical Detection of Tumor-Derived Small Extracellular Vesicles

Yongqi Yu et al.

Summary: An AND logic gate assisted by dual aptamers was developed for sensitive electrochemical detection of tumor-derived sEVs based on a cyclic enzymatic signal amplification strategy. The detection for CCRF-CEM sEVs showed a good linear response with a potential application in accurate cancer diagnostics.

ANALYTICAL CHEMISTRY (2021)

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Article Chemistry, Multidisciplinary

Logic-Gated Proximity Aptasensing for Cell-Surface Real-Time Monitoring of Apoptosis

Jiao Zheng et al.

Summary: The study introduces a strategy for real-time monitoring ATP exocytosis and drug-stimulated apoptosis in cancer cells by constructing a DNA logic-gated nanoplatform. This platform captures endogenous ATP released during chemotherapy drug stimulation, providing a sensitive approach for dynamically evaluating drug-induced apoptosis and therapeutic efficacy.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

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Article Chemistry, Multidisciplinary

Aptamer-Based Logic Computing Reaction on Living Cells to Enable Non-Antibody Immune Checkpoint Blockade Therapy

Yu Yang et al.

Summary: The development of an aptamer-based logic computing reaction allows for precise and sustained immune checkpoint blockade therapy on the surface of cancer cells without the need for antibodies. Using a bioorthogonal reaction, aptamers are conjugated on the living cell surface to trigger a T cell-mediated antitumor immunotherapy, significantly prolonging overall mouse survival.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)

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Article Chemistry, Multidisciplinary

Activating a DNA Nanomachine via Computation across Cancer Cell Membranes for Precise Therapy of Solid Tumors

Yue Zhang et al.

Summary: By modifying DNA strands on upconversion nanoparticles, a transmembrane DNA logical computation strategy is designed to activate a DNA nanomachine only in cancer cells from a complex solid tumor microenvironment, achieving highly precise therapy.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)

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In Situ Programmable DNA Circuit-Promoted Electrochemical Characterization of Stemlike Phenotype in Breast Cancer

Ya Cao et al.

Summary: The electrochemical phenotyping method provides a low-cost and robust way to characterize stemlike phenotype in breast cancer, offering sensitivity, accuracy, and reliability. It can monitor phenotypic transition of cancer cells, drug effects, and determine stemlike phenotype, potentially supporting precise management of breast tumors.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2021)

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DNA nanotechnology enhanced single-molecule biosensing and imaging

Shengnan Fu et al.

Summary: Single-molecule tools, with the application of DNA nanotechnology, not only improve sensitivity and specificity, but also provide molecular receptors and rulers, helping to address the challenges hindering the development of single-molecule sensing and imaging.

TRAC-TRENDS IN ANALYTICAL CHEMISTRY (2021)

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Xue Gong et al.

Summary: The study introduces a novel approach to achieving tumorous biomarker-activated RNAi therapy through the design of RNAi prodrugs in extracellular vesicles. This system shows promise for personalized therapy with reduced off-target effects and enhanced cancer-specific activation.

NATURE COMMUNICATIONS (2021)

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DNA Logic Circuits for Multiple Tumor Cells Identification Using Intracellular MicroRNA Molecular Bispecific Recognition

Qiqi Yang et al.

Summary: This study developed a DNA circuit for identifying multiple cancer cell subtypes based on miRNA bispecific recognition, utilizing a three-dimensional logic gate nano-hexahedron framework. It can simultaneously identify A549 and MCF-7 cancer cells from NHDF normal cells, successfully distinguishing different types of cancer cells.

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Photodynamic Therapy: Targeting Cancer Biomarkers for the Treatment of Cancers

Xinning Wang et al.

Summary: Photodynamic therapy (PDT) is an effective treatment modality for cancers that uses harmless light to activate photosensitizers, targeting specific tumor cells to improve treatment efficacy and reduce toxicity to normal tissues. Recent advancements in targeted delivery of photosensitizers to cancer cells have shown promising results in enhancing PDT outcomes.

CANCERS (2021)

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DNA Computing: Principle, Construction, and Applications in Intelligent Diagnostics

Qian Ma et al.

Summary: The demands for faster information processing speed and denser data storage are driving the development of new computation modes. DNA, as an important biomolecule, has shown great potential in information processing and storage, while also playing key biological roles. By combining these capabilities, DNA computing has opened up new fields in biology and biomedicine, with a focus on intelligent diagnostics for biomedical applications.

SMALL STRUCTURES (2021)

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Review Nanoscience & Nanotechnology

Biosensors based on DNA logic gates

Fangfei Yin et al.

Summary: Biosensors utilize biological recognition to selectively respond to specific targets, providing digital outputs for qualitative analysis in biomedical applications. Over the past decade, research on DNA logic gate-based biosensors has advanced significantly, aiming to achieve logic-gated biomedical functions.

VIEW (2021)

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Article Chemistry, Physical

DNA Structural Barcode Copying and Random Access

Filip Boskovic et al.

Summary: The study demonstrates the establishment of DNA structural barcodes through DNA self-assembly, allowing for the copying and random access of specific DNA molecules from a library using PCR. The readout of DNA structural barcodes is performed through nanopore measurements, providing a roadmap for convenient production of large quantities of self-assembled DNA nanostructures and crucial capability for multiplexed single-molecule sensing and DNA data storage.

SMALL STRUCTURES (2021)

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Review Chemistry, Physical

Boolean logic gate based on DNA strand displacement for biosensing: current and emerging strategies

Shuang Zhao et al.

Summary: DNA computers are a prominent type of next-generation molecular computers capable of performing Boolean logic. SDLG logic gates have shown great potential in biosensing by analyzing multiple targets simultaneously. The unique YES/NO output generated by SDLG biosensors contrasts with the quantitative measurement used in traditional biosensors.

NANOSCALE HORIZONS (2021)

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Data Storage Based on DNA

Yaya Hao et al.

Summary: In recent years, DNA as a data storage medium has shown rapid development due to its high density, reproducibility and durability. Recent advances in using artificially designed DNA materials for data storage include encoding, writing, storage, retrieving, reading, and decoding, as well as different forms of data storage strategies using DNA nanostructures.

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DNA Nanotechnology-based Biocomputing

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CHEMICAL RESEARCH IN CHINESE UNIVERSITIES (2020)

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Precision-Guided Missile-Like DNA Nanostructure Containing Warhead and Guidance Control for Aptamer-Based Targeted Drug Delivery into Cancer Cells in Vitro and in Vivo

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NIR light-triggered nanomaterials-based prodrug activation towards cancer therapy

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Chao Zhang et al.

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Dual MicroRNA-Triggered Drug Release System for Combined Chemotherapy and Gene Therapy with Logic Operation

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Construction of a Ternary Complex Based DNA Logic Nanomachine for a Highly Accurate Imaging Analysis of Cancer Cells

Chang Feng et al.

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Role of Glutathione in Cancer: From Mechanisms to Therapies

Luke Kennedy et al.

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Mariia Andrianova et al.

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Na Zhao et al.

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Daoqing Fan et al.

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Shengnan Fu et al.

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Sue Zhao et al.

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Marcello DeLuca et al.

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Qinqin Hu et al.

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Suman Kumar Vodnala et al.

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Sensitive Detection of DNA Lesions by Bulge-Enhanced Highly Specific Coamplification at Lower Denaturation Temperature Polymerase Chain Reaction

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Ionic immune suppression within the tumour microenvironment limits T cell effector function

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