4.8 Article

Novel insights into the dissemination route of Japanese apricot (Prunus mume Sieb. et Zucc.) based on genomics

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Dsuite - Fast D-statistics and related admixture evidence from VCF files

Milan Malinsky et al.

Summary: Dsuite is an efficient software package that allows genome scale calculations of the D and f(4)-ratio statistics from VCF files, enabling evaluation of all combinations of multiple populations or species, particularly suited for larger genomic data sets.

MOLECULAR ECOLOGY RESOURCES (2021)

Article Forestry

Genetic diversity analysis of Chinese plum (Prunus salicina L.) based on whole-genome resequencing

Xiao Wei et al.

Summary: This study conducted whole-genome resequencing of 67 Chinese plum accessions to construct high-quality SNPs, revealing that the plum accessions could be classified into four groups based on their origin location. The southern cultivar group showed higher genetic diversity indices compared to the northern cultivar group, with gene flow detected from the southern cultivar group to the foreign cultivar group. The domestication center of origin of Chinese plum was concluded to be southwestern China, providing genetic variation features and population structure insights for breeders to improve Chinese plum varieties.

TREE GENETICS & GENOMES (2021)

Article Biochemical Research Methods

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on variant call format files

Shan-Shan Dong et al.

Summary: LDBlockShow is an open source software that visualizes LD and haplotype blocks, providing faster speed and lower memory consumption compared to other tools.

BRIEFINGS IN BIOINFORMATICS (2021)

Article Ecology

Association between blooming time and climatic adaptation in Prunus mume

Ting Shi et al.

ECOLOGY AND EVOLUTION (2020)

Article Biotechnology & Applied Microbiology

The genome evolution and domestication of tropical fruit mango

Peng Wang et al.

GENOME BIOLOGY (2020)

Article Plant Sciences

UDP-glucosyltransferase PpUGT85A2 controls volatile glycosylation in peach

Boping Wu et al.

JOURNAL OF EXPERIMENTAL BOTANY (2019)

Article Biotechnology & Applied Microbiology

Quantitative principles of cis-translational control by general mRNA sequence features in eukaryotes

Jingyi Jessica Li et al.

GENOME BIOLOGY (2019)

Article Biochemical Research Methods

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen et al.

BIOINFORMATICS (2018)

Article Plant Sciences

An apple NAC transcription factor negatively regulates cold tolerance via CBF-dependent pathway

Jian-Ping An et al.

JOURNAL OF PLANT PHYSIOLOGY (2018)

Article Horticulture

RNA-sequencing Analysis Identifies Genes Associated with Chilling-mediated Endodormancy Release in Apple

Takanori Takeuchi et al.

JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE (2018)

Article Biochemistry & Molecular Biology

Genome of Wild Mandarin and Domestication History of Mandarin

Lun Wang et al.

MOLECULAR PLANT (2018)

Article Biotechnology & Applied Microbiology

Diversification and independent domestication of Asian and European pears

Jun Wu et al.

GENOME BIOLOGY (2018)

Article Biotechnology & Applied Microbiology

Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice

Marta Brozynska et al.

PLANT BIOTECHNOLOGY JOURNAL (2017)

Article Multidisciplinary Sciences

Evolutionary genomics of grape (&ITVitis vinifera&IT ssp &ITvinifera&IT) domestication

Yongfeng Zhou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Ultrathin metal-organic framework array for efficient electrocatalytic water splitting

Jingjing Duan et al.

NATURE COMMUNICATIONS (2017)

Article Plant Sciences

SVP-like MADS Box Genes Control Dormancy and Budbreak in Apple

Rongmei Wu et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Genetics & Heredity

Domestication history and geographical adaptation inferred from a SNP map of African rice

Rachel S. Meyer et al.

NATURE GENETICS (2016)

Article Multidisciplinary Sciences

Urban heat islands in China enhanced by haze pollution

Chang Cao et al.

NATURE COMMUNICATIONS (2016)

Article Biochemical Research Methods

BigBWA: approaching the Burrows-Wheeler aligner to Big Data technologies

Jose M. Abuin et al.

BIOINFORMATICS (2015)

Article Biotechnology & Applied Microbiology

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

Zhengkui Zhou et al.

NATURE BIOTECHNOLOGY (2015)

Article Ecology

POPART: full-feature software for haplotype network construction

Jessica W. Leigh et al.

METHODS IN ECOLOGY AND EVOLUTION (2015)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

Bastian Pfeifer et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Review Ecology

Genome sequencing and population genomics in non-model organisms

Hans Ellegren

TRENDS IN ECOLOGY & EVOLUTION (2014)

Article Biotechnology & Applied Microbiology

LUMPY: a probabilistic framework for structural variant discovery

Ryan M. Layer et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Multidisciplinary Sciences

Whole-genome sequencing reveals untapped genetic potential in Africa's indigenous cereal crop sorghum

Emma S. Mace et al.

NATURE COMMUNICATIONS (2013)

Article Evolutionary Biology

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist et al.

SYSTEMATIC BIOLOGY (2012)

Article Multidisciplinary Sciences

The genome of Prunus mume

Qixiang Zhang et al.

NATURE COMMUNICATIONS (2012)

Article Genetics & Heredity

GCTA: A Tool for Genome-wide Complex Trait Analysis

Jian Yang et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2011)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Medicine, Research & Experimental

MK615: A new therapeutic approach for the treatment of oral disease

Yoko Morimoto-Yamashita et al.

MEDICAL HYPOTHESES (2011)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Editorial Material Biotechnology & Applied Microbiology

Genome resequencing and genetic variation

Michael Stratton

NATURE BIOTECHNOLOGY (2008)

Article Biochemistry & Molecular Biology

NCBIBLAST: a better web interface

Mark Johnson et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Biochemistry & Molecular Biology

Population genomics:: Whole-genome analysis of polymorphism and divergence in Drosophila simulans

David J. Begun et al.

PLOS BIOLOGY (2007)

Article Biochemistry & Molecular Biology

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

D Laslett et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

DnaSP, DNA polymorphism analyses by the coalescent and other methods

J Rozas et al.

BIOINFORMATICS (2003)