4.5 Article

MiRNA expression analysis during somatic embryogenesis in Coffea canephora

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

PmiREN2.0: from data annotation to functional exploration of plant microRNAs

Zhonglong Guo et al.

Summary: This study updated the PmiREN2.0 database with a large amount of new miRNA data, including predicted upstream transcription factors and annotation of miRNA targets, constructed a genome-wide regulatory network centered on miRNAs, built phylogenetic trees of conserved miRNA families, added design tools, and established a forum called 'PmiREN Community' for resource and new discovery sharing.

NUCLEIC ACIDS RESEARCH (2022)

Article Plant Sciences

Evidence of the Regulatory Roles of Candidate miRNAs During Somatic Embryogenesis inLilium davidiivar.unicolor

Jing Zhang et al.

Summary: Through sequencing methods, we identified and described miRNAs and target genes in Lilium davidii var. unicolor, revealing a large number of known and novel miRNAs. The miR159 family exhibited the highest expression and predicted 711 target genes. Differential expression of miRNAs during SEG were identified, along with exploration of expression profiles for 12 miRNAs and 8 target genes.

JOURNAL OF PLANT GROWTH REGULATION (2021)

Article Plant Sciences

Molecular analysis of ERF subfamily genes during coffee somatic embryogenesis

Matheus Martins Daude et al.

Summary: Coffee, with its ample cultivation and economic potential, faces challenges related to pests, diseases, and propagation. Studying the expression patterns of ERF genes may provide insights into the mechanisms of somatic embryogenesis in coffee.

IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT (2021)

Article Plant Sciences

The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification

Jun Wang et al.

Summary: The study reveals that OsCUC1 and OsCUC3 play partially redundant roles in meristem/organ boundary specification in rice. Mutations in either OsCUC1 or OsCUC3 result in defects in boundary establishment, as well as fusion of leaves and filaments. Overexpression of osa-miR164c in transgenic plants leads to a phenotype similar to the OsCUC1 knockout line.

NEW PHYTOLOGIST (2021)

Article Plant Sciences

Global 5-methylcytosine and physiological changes are triggers of indirect somatic embryogenesis inCoffea canephora

Paulo Marcos Amaral-Silva et al.

Summary: This study investigated and described the global 5-methylcytosine and physiological changes that occur in cells of Coffea canephora during proliferation and somatic embryo regeneration steps. Epigenetic and physiological aspects in cell proliferation were found to promote ISE, while changes in global 5-mC% and physiological factors were correlated with somatic embryo regeneration. Dynamic and coordinated epigenetic and physiological changes were observed during ISE in liquid system.

PROTOPLASMA (2021)

Review Plant Sciences

Time to Wake Up: Epigenetic and Small-RNA-Mediated Regulation during Seed Germination

Eduardo Lujan-Soto et al.

Summary: Plants make decisions throughout their lifetime based on complex networks, including genome stability, environmental signal transduction, and transcriptional landscape. Epigenetic modifications and small non-coding RNAs are believed to play important roles in these processes, closely associated with seed traits and interactions with environmental factors.

PLANTS-BASEL (2021)

Article Forestry

Genomic Methylated Cytosine Level during the Dedifferentiation and Cellular Competence in Coffea arabica Lines: Insights about the Different In Vitro Responses

Joao Paulo de Morais Oliveira et al.

Summary: Different genotypes of Coffea arabica exhibit distinct responses in vitro and can experience somaclonal variation. Epigenetic mechanisms, such as global cytosine methylation, play a role in influencing Coffea in vitro responses. During indirect somatic embryogenesis, the methylated cytosine levels can affect cell competence and somatic embryos regeneration, with different genotypes showing varied levels of methylation.

FORESTS (2021)

Article Plant Sciences

Genome-Wide Analysis, Modeling, and Identification of Amino Acid Binding Motifs Suggest the Involvement of GH3 Genes during Somatic Embryogenesis of Coffea canephora

Hugo A. Mendez-Hernandez et al.

Summary: Auxin is essential for plant growth and development, and its homeostasis is maintained through processes like biosynthesis, transport, degradation, and conjugation. The GH3 family genes, identified in Coffea canephora, play a crucial role in somatic embryogenesis induction, showing a conserved structural topology for binding nucleotides and amino acids during SE. Understanding the function of CcGH3 genes provides insights for future exploration and genetic manipulation in C. canephora.

PLANTS-BASEL (2021)

Article Plant Sciences

Cytokinin oxidase/dehydrogenase inhibitors stimulate 2iP to induce direct somatic embryogenesis in Coffea arabica

Nino Murvanidze et al.

Summary: The research found that two newly designed compounds can indirectly induce somatic embryogenesis in Coffea spp., promoting plant growth and development.

PLANT GROWTH REGULATION (2021)

Article Evolutionary Biology

Origin and Evolutionary Dynamics of the miR2119 and ADH1 Regulatory Module in Legumes

Carlos De la Rosa et al.

GENOME BIOLOGY AND EVOLUTION (2020)

Review Plant Sciences

Signaling Overview of Plant Somatic Embryogenesis

Hugo A. Mendez-Hernandez et al.

FRONTIERS IN PLANT SCIENCE (2019)

Article Biotechnology & Applied Microbiology

The role of miRNA in somatic embryogenesis

Zahid Hameed Siddiqui et al.

GENOMICS (2019)

Article Biochemistry & Molecular Biology

LaMIR166a-mediated auxin biosynthesis and signalling affect somatic embryogenesis in Larix leptolepis

Zhe-Xin Li et al.

MOLECULAR GENETICS AND GENOMICS (2018)

Article Biochemistry & Molecular Biology

psRNATarget: a plant small RNA target analysis server (2017 release)

Xinbin Dai et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Cell Biology

A Small RNA Pathway Mediates Allelic Dosage in Endosperm

Robert M. Erdmann et al.

CELL REPORTS (2017)

Article Plant Sciences

MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis

Katarzyna Szyrajew et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Biochemical Research Methods

UpSetR: an R package for the visualization of intersecting sets and their properties

Jake R. Conway et al.

BIOINFORMATICS (2017)

Article Biotechnology & Applied Microbiology

MicroRNA Promoter Identification in Arabidopsis Using Multiple Histone Markers

Yuming Zhao et al.

BIOMED RESEARCH INTERNATIONAL (2015)

Article Plant Sciences

miRNA expression during prickly pear cactus fruit development

Flor de Fatima Rosas-Cardenas et al.

PLANTA (2015)

Review Biotechnology & Applied Microbiology

In vitro culture: an epigenetic challenge for plants

Rosa Us-Camas et al.

PLANT CELL TISSUE AND ORGAN CULTURE (2014)

Article Multidisciplinary Sciences

Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs

Ricardo A. Chavez Montes et al.

NATURE COMMUNICATIONS (2014)

Review Plant Sciences

Micro-regulators of auxin action

Neeti Sanan-Mishra et al.

PLANT CELL REPORTS (2013)

Article Plant Sciences

miRNA regulation in the early development of barley seed

Julien Curaba et al.

BMC PLANT BIOLOGY (2012)

Article Biochemical Research Methods

A simple and efficient method for isolating small RNAs from different plant species

Flor de Fatima Rosas-Cardenas et al.

PLANT METHODS (2011)

Article Biochemistry & Molecular Biology

Four abiotic stress-induced miRNA families differentially regulated in the embryogenic and non-embryogenic callus tissues of Larix leptolepis

Shougong Zhang et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2010)

Review Plant Sciences

Regulation of Somatic Embryogenesis in Higher Plants

Xiyan Yang et al.

CRITICAL REVIEWS IN PLANT SCIENCES (2010)

Review Plant Sciences

MicroRNA Gene Regulation Cascades During Early Stages of Plant Development

Hiroyuki Nonogaki

PLANT AND CELL PHYSIOLOGY (2010)

Article Plant Sciences

Transcriptome-wide identification of microRNA targets in rice

Yong-Fang Li et al.

PLANT JOURNAL (2010)

Review Cell Biology

Small RNAs and Their Roles in Plant Development

Xuemei Chen

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY (2009)

Review Biochemistry & Molecular Biology

Origins and Mechanisms of miRNAs and siRNAs

Richard W. Carthew et al.

Article Biochemistry & Molecular Biology

Identification of MicroRNAs in Wild Soybean (Glycine soja)

Rui Chen et al.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress

Catalina Arenas-Huertero et al.

PLANT MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Bioinformatic identification and expression analysis of new microRNAs from Medicago truncatula

Zhao Sheng Zhou et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)

Article Biotechnology & Applied Microbiology

Selection and mutation on microRNA target sequences during rice evolution

Xingyi Guo et al.

BMC GENOMICS (2008)

Article Plant Sciences

Identification of genes expressed during early somatic embryogenesis in Pinus radiata

Felipe Aquea et al.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2008)

Article Plant Sciences

Identification of novel small RNAs in tomato (Solanum lycopersicum)

Rachel L. Rusholme Pilcher et al.

PLANTA (2007)

Review Biotechnology & Applied Microbiology

Embryo production through somatic embryogenesis can be used to study cell differentiation in plants

Francisco R. Quiroz-Figueroa et al.

PLANT CELL TISSUE AND ORGAN CULTURE (2006)

Article Biochemistry & Molecular Biology

Antiquity of microRNAs and their targets in land plants

MJ Axtell et al.

PLANT CELL (2005)

Article Biochemistry & Molecular Biology

Cloning and characterization of MicroRNAs from rice

R Sunkar et al.

PLANT CELL (2005)

Article Biochemistry & Molecular Biology

Prediction of plant microRNA targets

MW Rhoades et al.