相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Single-strand DNA breaks cause replisome disassembly
Kyle B. Vrtis et al.
MOLECULAR CELL (2021)
DNAscent v2: detecting replication forks in nanopore sequencing data with deep learning
Michael A. Boemo
BMC GENOMICS (2021)
Genome-wide mapping of human DNA replication by optical replication mapping supports a stochastic model of eukaryotic replication
Weitao Wang et al.
MOLECULAR CELL (2021)
Approaching Protein Barriers: Emerging Mechanisms of Replication Pausing in Eukaryotes
Maksym Shyian et al.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2021)
Determinants of Replication-Fork Pausing at tRNA Genes in Saccharomyces cerevisiae
Rani Yeung et al.
GENETICS (2020)
Yeast Genome Maintenance by the Multifunctional PIF1 DNA Helicase Family
Julius Muellner et al.
GENES (2020)
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Magali Hennion et al.
GENOME BIOLOGY (2020)
Pif1-Family Helicases Support Fork Convergence during DNA Replication Termination in Eukaryotes
Tom D. Deegan et al.
MOLECULAR CELL (2019)
Transcription-mediated replication hindrance: a major driver of genome instability
Belen Gomez-Gonzalez et al.
GENES & DEVELOPMENT (2019)
Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads
Carolin A. Mueller et al.
NATURE METHODS (2019)
Sir2 suppresses transcription-mediated displacement of Mcm2-7 replicative helicases at the ribosomal DNA repeats
Eric J. Foss et al.
PLOS GENETICS (2019)
Replication fork pausing at protein barriers on chromosomes
Kohji Hizume et al.
FEBS LETTERS (2019)
Ctf4 organizes sister replisomes and Pol α into a replication factory
Zuanning Yuan et al.
ELIFE (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
The mechanism of eukaryotic CMG helicase activation
Max E. Douglas et al.
NATURE (2018)
Single-cell replication profiling to measure stochastic variation in mammalian replication timing
Vishnu Dileep et al.
NATURE COMMUNICATIONS (2018)
Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse
Anthony Tubbs et al.
CELL (2018)
Pif1-family helicases cooperatively suppress widespread replication-fork arrest at tRNA genes
Joseph S. Osmundson et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
Pif1-family helicases cooperatively suppress widespread replication-fork arrest at tRNA genes
Joseph S. Osmundson et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
Mechanisms of DNA replication termination
James M. Dewar et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
DNA replication through a chromatin environment
James M. Bellush et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
Structure of eukaryotic CMG helicase at a replication fork and implications to replisome architecture and origin initiation
Roxana Georgescu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)
Chongyi Chen et al.
SCIENCE (2017)
PIF1 family DNA helicases suppress R-loop mediated genome instability at tRNA genes
Phong Lan Thao Tran et al.
NATURE COMMUNICATIONS (2017)
Eukaryotic DNA Replication Fork
Peter M. J. Burgers et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 86 (2017)
Oxford Nanopore MinION Sequencing and Genome Assembly
Hengyun Lu et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2016)
The mechanism of DNA replication termination in vertebrates
James M. Dewar et al.
NATURE (2015)
ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
Gabriel E. Zentner et al.
NATURE COMMUNICATIONS (2015)
Repair of a DNA-Protein Crosslink by Replication-Coupled Proteolysis
Julien P. Duxin et al.
CELL (2014)
Causes and consequences of replication stress
Michelle K. Zeman et al.
NATURE CELL BIOLOGY (2014)
Quantitative, Genome-Wide Analysis of Eukaryotic Replication Initiation and Termination
Sean R. McGuffee et al.
MOLECULAR CELL (2013)
Global 'bootprinting' reveals the elastic architecture of the yeast TFIIIB-TFIIIC transcription complex in vivo
V. Nagarajavel et al.
NUCLEIC ACIDS RESEARCH (2013)
High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination
Michelle Hawkins et al.
CELL REPORTS (2013)
Intrinsic coupling of lagging-strand synthesis to chromatin assembly
Duncan J. Smith et al.
NATURE (2012)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
RATT: Rapid Annotation Transfer Tool
Thomas D. Otto et al.
NUCLEIC ACIDS RESEARCH (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Conserved nucleosome positioning defines replication origins
Matthew L. Eaton et al.
GENES & DEVELOPMENT (2010)
Uncoupling of Sister Replisomes during Eukaryotic DNA Replication
Hasan Yardimci et al.
MOLECULAR CELL (2010)
Replication Termination at Eukaryotic Chromosomes Is Mediated by Top2 and Occurs at Genomic Loci Containing Pausing Elements
Daniele Fachinetti et al.
MOLECULAR CELL (2010)
GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome
Matthew D. Sekedat et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Replicon Dynamics, Dormant Origin Firing, and Terminal Fork Integrity after Double-Strand Break Formation
Ylli Doksani et al.
CELL (2009)
Highly Transcribed RNA Polymerase II Genes Are Impediments to Replication Fork Progression in Saccharomyces cerevisiae
Anna Azvolinsky et al.
MOLECULAR CELL (2009)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
DNA polymerase kappa produces interrupted mutations and displays polar pausing within mononucleotide microsatellite sequences
Suzanne E. Hile et al.
NUCLEIC ACIDS RESEARCH (2008)
Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells
Chiara Conti et al.
MOLECULAR BIOLOGY OF THE CELL (2007)
OriDB: a DNA replication origin database
Conrad A. Nieduszynski et al.
NUCLEIC ACIDS RESEARCH (2007)
Live-cell imaging reveals replication of individual replicons in eukaryotic replication factories
Etsushi Kitamura et al.
CELL (2006)
The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae
BK Mohanty et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Multiple mechanisms control chromosome integrity after replication fork uncoupling and restart at irreparable UV lesions
M Lopes et al.
MOLECULAR CELL (2006)
The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes
AS Ivessa et al.
MOLECULAR CELL (2003)
The replication fork barrier site forms a unique structure with Fob1p and inhibits the replication fork
T Kobayashi
MOLECULAR AND CELLULAR BIOLOGY (2003)
Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus
P Pasero et al.
GENES & DEVELOPMENT (2002)
The Saccharomyces Pif1p DNA helicase and the highly related Rrm3p have opposite effects on replication fork progression in ribosomal DNA
AS Ivessa et al.
CELL (2000)