Pseudomonas rustica sp. nov., isolated from bulk tank raw milk a a German dairy farm

Here we present the description of a novel Pseudomonas species, designated Pseudomonas rustica sp. nov., which was isolated from raw milk samples obtained from Germany. Results of initial 16S rRNA gene sequence analysis assigned the strain into the genus Pseudomonas and showed Pseudomonas helmanticensis, Pseudomonas neuropathica and Pseudomonas atagonensis to be its closest relatives. Further studies including sequence analysis of the rpoB gene, multi-gene phylogenetic tree reconstruction, whole-genome sequence comparisons, cellular fatty acid analysis and chemotaxonomic characterization showed a clear separation from the known Pseudomonas species. Isolate MBT-4(T) was closely related to Pseudomonas helmanticensis, 'Pseudomonas crudilactis' and Pseudomonas neuropathica with average nucleotide identities based on BLAST values of 88.8, 88.8 and 88.6%, respectively. Therefore, the strain can be classified into the Pseudomonas koreensis subgroup of the Pseudomonas fluorescens group. The G+C content of strain MBT-4(T) was 58.9 mol%. The strain was catalase- and oxidase-positive, while the beta-galactosidase reaction was negative. Growth occurred between 4 and 30 degrees C and at pH values from pH 6.0 to 8.0. In conclusion, strain MBT-4(T) belongs to a novel species, for which the name Pseudomonas rustica sp. nov. is proposed. The type strain is MBT-4(T) (=DSM 112348(T)=LMG 32241(T)) and strain MBT-17 is also a representative of this species.

Automated summary

In this study, a novel Pseudomonas species, Pseudomonas rustica sp. nov., was isolated from raw milk samples obtained from Germany. Genomic and phylogenetic analyses showed that the strain is a distinct species within the Pseudomonas genus.