☆ 4.7 Article

Assessment of human microbiota stability across longitudinal samples using iteratively growing-partitioned clustering

BRIEFINGS IN BIOINFORMATICS (2022)

相关参考文献

注意：仅列出部分参考文献，下载原文获取全部文献信息。

Article Gastroenterology & Hepatology

Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study

Adam G. Clooney et al.

Summary: The study found reduced microbiota diversity and increased variability in patients with CD and UC compared to controls. Longitudinal analysis showed decreased temporal microbiota stability in IBD, especially in patients with changes in disease activity. Machine learning was able to separate disease from controls and active from inactive disease.

GUT (2021)

添加到收藏夹

Article Gastroenterology & Hepatology

Gut microbiome stability and resilience: elucidating the response to perturbations in order to modulate gut health

Marina Fassarella et al.

Summary: The human gut microbiome is a complex ecosystem that influences human health. Maintaining stability and resilience of the gut microbiome requires microbial diversity, metabolic flexibility, functional redundancy, and interactions between microbes and the host. External disturbances like antibiotic therapy can disrupt this balance, leading to unhealthy states.

GUT (2021)

添加到收藏夹

Article Multidisciplinary Sciences

Metagenomic insights of the infant microbiome community structure and function across multiple sites in the United States

Giorgio Casaburi et al.

Summary: The study found high levels of bacteria associated with enteric inflammation, antibiotic resistance genes, and dysbiosis in the gut microbiome of healthy infants in the US, revealing a widespread dysbiosis that is previously unappreciated. Additionally, it was discovered that Bifidobacterium species in the infant gut had limited capacity to metabolize human milk oligosaccharides, with strains capable of utilizing HMOs being exceptionally rare.

SCIENTIFIC REPORTS (2021)

添加到收藏夹

Article Microbiology

A Longitudinal Study of the Human Oropharynx Microbiota Over Time Reveals a Common Core and Significant Variations With Self-Reported Disease

Lydia Luise Bach et al.

Summary: The oropharyngeal microbiome in healthy adults is characterized by high alpha diversity, evenness, and temporal stability, with significant differences in community composition between individuals. Changes in community composition were associated with disease states, suggesting specific alterations during illness. Individual core microbiomes share a substantial number of OTUs across participants, primarily composed of Streptococci and Veillonella.

FRONTIERS IN MICROBIOLOGY (2021)

添加到收藏夹

Article Multidisciplinary Sciences

Neonatal antibiotic exposure impairs child growth during the first six years of life by perturbing intestinal microbial colonization

Atara Uzan-Yulzari et al.

Summary: Exposure to antibiotics in the neonatal period may affect growth development in boys but not girls, while antibiotic use later in childhood is associated with increased body mass index. Additionally, neonatal antibiotic exposure has long-term effects on gut microbiome, leading to growth impairment in boys during the first six years of life.

NATURE COMMUNICATIONS (2021)

添加到收藏夹

Article Biochemistry & Molecular Biology

The long-term genetic stability and individual specificity of the human gut microbiome

Lianmin Chen et al.

Summary: By tracking the gut microbiome, human phenotypes, and metabolites, researchers have developed a microbial fingerprinting method for classifying samples with high accuracy. The study suggests that the gut microbiome may influence cardiometabolic health through its metabolites, highlighting the importance of microbial stability and variation in relation to host physiology.

CELL (2021)

添加到收藏夹

Article Cell Biology

Stability of the human gut virome and effect of gluten-free diet

Sanzhima Garmaeva et al.

Summary: The study found that there is a high diversity of gut virome composition in healthy adults, with individual viromes stable at the family level but varying significantly at the genera and species levels. Lower initial diversity of the human gut virome leads to a more pronounced effect of dietary intervention on its composition.

CELL REPORTS (2021)

添加到收藏夹

Article Biochemistry & Molecular Biology

Bifidobacteria-mediated immune system imprinting early in life

Bethany M. Henrick et al.

Summary: Early immune-microbe interactions play a role in the development of allergies, asthma, and inflammatory diseases. Breastfeeding promotes healthier immune-microbe relationships by providing necessary nutrients to beneficial microbes. The lack of bifidobacteria and genes required for HMO utilization can lead to systemic inflammation and immune dysregulation in early life.

CELL (2021)

添加到收藏夹

Article Biochemistry & Molecular Biology

Gut-microbiota-targeted diets modulate human immune status

Hannah C. Wastyk et al.

Summary: This study investigated the effects of plant-based fiber and fermented foods on the human microbiome and immune system, finding that a high-fiber diet increased glycan-degrading carbohydrate active enzymes while a high-fermented-food diet increased microbiome diversity and decreased inflammatory markers. The data suggest that coupling dietary interventions with immune and microbiome profiling can provide personalized and populationwide insights, with fermented foods potentially valuable in countering decreased microbiome diversity and increased inflammation in industrialized societies.

CELL (2021)

添加到收藏夹

Article Gastroenterology & Hepatology

Gut microbiota profiles in critically ill patients, potential biomarkers and risk variables for sepsis

Gloria M. Agudelo-Ochoa et al.

GUT MICROBES (2020)

添加到收藏夹

Article Microbiology

Daily Vaginal Microbiota Fluctuations Associated with Natural Hormonal Cycle, Contraceptives, Diet, and Exercise

Stephanie D. Song et al.

MSPHERE (2020)

添加到收藏夹

Article Veterinary Sciences

An Assessment of the Stability of the Canine Oral Microbiota After Probiotic Administration in Healthy Dogs Over Time

Sara E. Bell et al.

FRONTIERS IN VETERINARY SCIENCE (2020)

添加到收藏夹

Article Multidisciplinary Sciences

Deciphering functional redundancy in the human microbiome

Liang Tian et al.

NATURE COMMUNICATIONS (2020)

添加到收藏夹

Article Microbiology

Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn's remission patients despite temporal variations in microbial taxa, genomes, and proteomes

J. Alfredo Blakeley-Ruiz et al.

MICROBIOME (2019)

添加到收藏夹

Article Microbiology

Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans

Abigail J. Johnson et al.

CELL HOST & MICROBE (2019)

添加到收藏夹

Article Microbiology

Stability of the human faecal microbiome in a cohort of adult men

Raaj S. Mehta et al.

NATURE MICROBIOLOGY (2018)

添加到收藏夹

Article Microbiology

American Gut: an Open Platform for Citizen Science Microbiome Research

Daniel McDonald et al.

MSYSTEMS (2018)

添加到收藏夹

Review Microbiology

The resilience of the intestinal microbiota influences health and disease

Felix Sommer et al.

NATURE REVIEWS MICROBIOLOGY (2017)

添加到收藏夹

Article Microbiology

Microbiome Datasets Are Compositional: And This Is Not Optional

Gregory B. Gloor et al.

FRONTIERS IN MICROBIOLOGY (2017)

添加到收藏夹

Article Microbiology

Stress and stability: applying the Anna Karenina principle to animal microbiomes

Jesse R. Zaneveld et al.

NATURE MICROBIOLOGY (2017)

添加到收藏夹

Article Microbiology

Uncovering the Horseshoe Effect in Microbial Analyses

James T. Morton et al.

MSYSTEMS (2017)

添加到收藏夹

Article Ecology

Composition and temporal stability of the gut microbiota in older persons

Ian B. Jeffery et al.

ISME JOURNAL (2016)

添加到收藏夹

Article Biochemistry & Molecular Biology

Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data

Gregory B. Gloor et al.

CANADIAN JOURNAL OF MICROBIOLOGY (2016)

添加到收藏夹

Article Biochemistry & Molecular Biology

Temporal Stability of the Human Skin Microbiome

Julia Oh et al.

CELL (2016)

添加到收藏夹

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

添加到收藏夹

Article Multidisciplinary Sciences

Population-level analysis of gut microbiome variation

Gwen Falony et al.

SCIENCE (2016)

添加到收藏夹

Article Cell Biology

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

Moran Yassour et al.

SCIENCE TRANSLATIONAL MEDICINE (2016)

添加到收藏夹

Review Biochemistry & Molecular Biology

Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance

Andres Moya et al.

TRENDS IN MICROBIOLOGY (2016)

添加到收藏夹

Article Multidisciplinary Sciences

Temporal and spatial variation of the human microbiota during pregnancy

Daniel B. DiGiulio et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

添加到收藏夹

Review Multidisciplinary Sciences

Diversity, stability and resilience of the human gut microbiota

Catherine A. Lozupone et al.

NATURE (2012)

添加到收藏夹

Article Multidisciplinary Sciences

Human gut microbiome viewed across age and geography

Tanya Yatsunenko et al.

NATURE (2012)

添加到收藏夹

© Peeref 2019-2024. All rights reserved.