相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Circadian Clock Components Offer Targets for Crop Domestication and Improvement
C. Robertson McClung
GENES (2021)
Chronoculture, harnessing the circadian clock to improve crop yield and sustainability
Gareth Steed et al.
SCIENCE (2021)
Light Perception: A Matter of Time
Sabrina E. Sanchez et al.
MOLECULAR PLANT (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
Yang Liao et al.
NUCLEIC ACIDS RESEARCH (2019)
Complex interactions between day length and diurnal patterns of gene expression drive photoperiodic responses in a perennial C4 grass
Xiaoyu Weng et al.
PLANT CELL AND ENVIRONMENT (2019)
Continuous dynamic adjustment of the plant circadian oscillator
Alex A. R. Webb et al.
NATURE COMMUNICATIONS (2019)
The transcriptomic response to a short day to long day shift in leaves of the reference legume Medicago truncatula
Geoffrey Thomson et al.
PEERJ (2019)
Characterization of Two Growth Period QTLs Reveals Modification of PRR3 Genes During Soybean Domestication
Man-Wah Li et al.
PLANT AND CELL PHYSIOLOGY (2019)
The LNK Gene Family: At the Crossroad between Light Signaling and the Circadian Clock
Maria Jose de Leone et al.
GENES (2019)
Targeted Recruitment of the Basal Transcriptional Machinery by LNK Clock Components Controls the Circadian Rhythms of Nascent RNAs in Arabidopsis
Yuan Ma et al.
PLANT CELL (2018)
Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication
Niels A. Mueller et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Geographic Variation of Plant Circadian Clock Function in Natural and Agricultural Settings
Kathleen Greenham et al.
JOURNAL OF BIOLOGICAL RHYTHMS (2017)
GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield
Sijia Lu et al.
NATURE GENETICS (2017)
Domestication selected for deceleration of the circadian clock in cultivated tomato
Niels A. Mueller et al.
NATURE GENETICS (2016)
MetaCycle: an integrated R package to evaluate periodicity in large scale data
Gang Wu et al.
BIOINFORMATICS (2016)
ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system
Jacob J. Hughey et al.
NUCLEIC ACIDS RESEARCH (2016)
Exploring New Alleles Involved in Tomato Fruit Quality in an Introgression Line Library of Solanum pimpinellifolium
Walter Barrantes et al.
FRONTIERS IN PLANT SCIENCE (2016)
Circadian Clock Genes Universally Control Key Agricultural Traits
Claire Bendix et al.
MOLECULAR PLANT (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Time-dependent sequestration of RVE8 by LNK proteins shapes the diurnal oscillation of anthocyanin biosynthesis
Pablo Perez-Garcia et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Highly efficient genomics-assisted development of a library of introgression lines of Solanum pimpinellifolium
Walter Barrantes et al.
MOLECULAR BREEDING (2014)
Genomic analyses provide insights into the history of tomato breeding
Tao Lin et al.
NATURE GENETICS (2014)
LNK1 and LNK2 Are Transcriptional Coactivators in the Arabidopsis Circadian Oscillator
Qiguang Xie et al.
PLANT CELL (2014)
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing
Saulo Aflitos et al.
PLANT JOURNAL (2014)
Strengths and Limitations of Period Estimation Methods for Circadian Data
Tomasz Zielinski et al.
PLOS ONE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator
Matias L. Rugnone et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Latitudinal clines: an evolutionary view on biological rhythms
Roelof A. Hut et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
The Role of a Pseudo-Response Regulator Gene in Life Cycle Adaptation and Domestication of Beet
Pierre A. Pin et al.
CURRENT BIOLOGY (2012)
Peroxiredoxins are conserved markers of circadian rhythms
Rachel S. Edgar et al.
NATURE (2012)
NIH Image to ImageJ: 25 years of image analysis
Caroline A. Schneider et al.
NATURE METHODS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
A conserved molecular basis for photoperiod adaptation in two temperate legumes
James L. Weller et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Mutation at the circadian clock gene EARLY MATURITY 8 adapts domesticated barley (Hordeum vulgare) to short growing seasons
Sebastien Faure et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A Map-Based Cloning Strategy Employing a Residual Heterozygous Line Reveals that the GIGANTEA Gene Is Involved in Soybean Maturity and Flowering
Satoshi Watanabe et al.
GENETICS (2011)
REVEILLE8 and PSEUDO-REPONSE REGULATOR5 Form a Negative Feedback Loop within the Arabidopsis Circadian Clock
Reetika Rawat et al.
PLOS GENETICS (2011)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock
Norihito Nakamichi et al.
PLANT CELL (2010)
Correct biological timing in Arabidopsis requires multiple light-signaling pathways
Neil Dalchau et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young et al.
GENOME BIOLOGY (2010)
The Circadian System in Higher Plants
Stacey L. Harmer
ANNUAL REVIEW OF PLANT BIOLOGY (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Entrainment of the Arabidopsis Circadian Clock
Matthew A. Jones
JOURNAL OF PLANT BIOLOGY (2009)
Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules
Todd P. Michael et al.
PLOS GENETICS (2008)
Conserved expression profiles of circadian clock-related genes in two Lemna species showing long-day and short-day photoperiodic flowering responses
Kumiko Miwa et al.
PLANT AND CELL PHYSIOLOGY (2006)
Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction
K Marrocco et al.
PLANT JOURNAL (2006)
The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley
A Turner et al.
SCIENCE (2005)
Molecular-timetable methods for detection of body time and rhythm disorders from single-time-point genome-wide expression profiles
HR Ueda et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Enhanced fitness conferred by naturally occurring variation in the circadian clock
TP Michael et al.
SCIENCE (2003)
Floral responses to photoperiod are correlated with the timing of rhythmic expression relative to dawn and dusk in Arabidopsis
LC Roden et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
EID1, an F-box protein involved in phytochrome A-specific light signaling
M Dieterle et al.
GENES & DEVELOPMENT (2001)