NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data

We present NewWave, a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA sequencing data. To achieve scalability, NewWave uses mini-batch optimization and can work with out-of-memory data, enabling users to analyze datasets with millions of cells.

Automated summary

NewWave is a scalable software package for dimensionality reduction and batch effect removal of single-cell RNA sequencing data. It utilizes mini-batch optimization to achieve scalability and can handle large-scale datasets.