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Donovan H. Parks et al.
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Eric P. Nawrocki et al.
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James J. Davis et al.
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Douglas L. Huseby et al.
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The cytochrome bd respiratory oxygen reductases
Vitaliy B. Borisov et al.
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Bas E. Dutilh et al.
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Marcus Lechner et al.
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Eva Biegel et al.
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Paraic O. Cuiv et al.
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Andre Antunes et al.
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V. N. Lazarev et al.
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Yohsuke Ogawa et al.
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The Evolution of Respiratory Chain Complex I from a Smaller Last Common Ancestor Consisting of 11 Protein Subunits
Vamsi K. Moparthi et al.
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Thomas Nordahl Petersen et al.
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Bacterial Microcompartments
Cheryl A. Kerfeld et al.
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Morgan N. Price et al.
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Daniel G. Gibson et al.
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The Sequence Alignment/Map format and SAMtools
Heng Li et al.
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Christiam Camacho et al.
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An improved cryogen for plunge freezing
William F. Tivol et al.
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Henning Seedorf et al.
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KAAS: an automatic genome annotation and pathway reconstruction server
Yuki Moriya et al.
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Glutamate 107 in subunit I of the cytochrome bd quinol oxidase from Escherichia coli is protonated and near the heme d/heme b595 binuclear center
Ke Yang et al.
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UCSF tomography: An integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction
Shawn Q. Zheng et al.
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Weizhong Li et al.
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Tatsushi Mogi et al.
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JI Glass et al.
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
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ARB:: a software environment for sequence data
W Ludwig et al.
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Arginine 391 in subunit I of the cytochrome bd quinol oxidase from Escherichia coli stabilizes the reduced form of the hemes and is essential for quinol oxidase activity
J Zhang et al.
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ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
D Laslett et al.
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Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments
VJ Orphan et al.
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Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
J Pernthaler et al.
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