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Catherine Burke et al.
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Frederick A. Matsen et al.
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Douglas B. Rusch et al.
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Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
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Miquel De Caceres et al.
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Adam C. Martiny et al.
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Ian Hewson et al.
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D. J. Scanlan et al.
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Philip L. F. Johnson et al.
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Gregory C. Kettler et al.
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Douglas B. Rusch et al.
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ML Coleman et al.
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JF Wu et al.
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