相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。CheckV assesses the quality and completeness of metagenome-assembled viral genomes
Stephen Nayfach et al.
NATURE BIOTECHNOLOGY (2021)
Cenote-Taker 2 democratizes virus discovery and sequence annotation
Michael J. Tisza et al.
VIRUS EVOLUTION (2021)
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Jiarong Guo et al.
MICROBIOME (2021)
Viral-Like Particles Are Associated With Endosymbiont Pathology in Florida Corals Affected by Stony Coral Tissue Loss Disease
Thierry M. Work et al.
FRONTIERS IN MARINE SCIENCE (2021)
Environmental specialization and cryptic genetic divergence in two massive coral species from the Florida Keys Reef Tract
John P. Rippe et al.
MOLECULAR ECOLOGY (2021)
Sensitive protein alignments at tree-of-life scale using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2021)
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2021)
Variable Species Responses to Experimental Stony Coral Tissue Loss Disease (SCTLD) Exposure
Sonora S. Meiling et al.
FRONTIERS IN MARINE SCIENCE (2021)
The Emergence and Initial Impact of Stony Coral Tissue Loss Disease (SCTLD) in the United States Virgin Islands
Marilyn E. Brandt et al.
FRONTIERS IN MARINE SCIENCE (2021)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
Elena Bushmanova et al.
GIGASCIENCE (2019)
Free-living and symbiotic lifestyles of a thermotolerant coral endosymbiont display profoundly distinct transcriptomes under both stable and heat stress conditions
Anthony J. Bellantuono et al.
MOLECULAR ECOLOGY (2019)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection
Norman Goodacre et al.
MSPHERE (2018)
Symbiodinium Functional Diversity in the Coral Siderastrea siderea Is Influenced by Thermal Stress and Reef Environment, but Not Ocean Acidification
Sarah W. Davies et al.
FRONTIERS IN MARINE SCIENCE (2018)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands
Ross Cunning et al.
PEERJ (2017)
Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the Genus Symbiodinium
John E. Parkinson et al.
GENOME BIOLOGY AND EVOLUTION (2016)
Unprecedented Disease-Related Coral Mortality in Southeastern Florida
William F. Precht et al.
SCIENTIFIC REPORTS (2016)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie et al.
BIOINFORMATICS (2014)
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
Marcel H. Schulz et al.
BIOINFORMATICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals
Till Bayer et al.
PLOS ONE (2012)
Easyfig: a genome comparison visualizer
Mitchell J. Sullivan et al.
BIOINFORMATICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
De novo assembly and analysis of RNA-seq data
Gordon Robertson et al.
NATURE METHODS (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Symbiodinium associations with diseased and healthy scleractinian corals
A. M. S. Correa et al.
CORAL REEFS (2009)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs
TC LaJeunesse
MARINE BIOLOGY (2002)