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Rene S. Hendriksen et al.
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M. R. Brown et al.
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Antton Alberdi et al.
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Alex Carr et al.
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Evan Bolyen et al.
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Ricardo D. Santander et al.
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Al-amin Danladi Bello et al.
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Best practices for analysing microbiomes
Rob Knight et al.
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Flow-cytometric quantification of microbial cells on sand from water biofilters
Marta Vignola et al.
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Lianhua Dong et al.
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Nicholas A. Bokulich et al.
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Stilianos Louca et al.
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Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent
Jenni Hultman et al.
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Absolute quantification of microbial taxon abundances
Ruben Props et al.
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Antibiotic resistance genes in an urban river as impacted by bacterial community and physicochemical parameters
Zhen-Chao Zhou et al.
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Sophie Weiss et al.
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Yong-Guan Zhu et al.
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Marie Delacre et al.
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DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
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Measuring the biodiversity of microbial communities by flow cytometry
Ruben Props et al.
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Justine Debelius et al.
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Bing Li et al.
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rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
Steven F. Stoddard et al.
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Underappreciated Role of Regionally Poor Water Quality on Globally Increasing Antibiotic Resistance
David W. Graham et al.
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The SILVA and All-species Living Tree Project (LTP) taxonomic frameworks
Pelin Yilmaz et al.
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Paul J. McMurdie et al.
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James J. Kozich et al.
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Human Health Risk Assessment (HHRA) for Environmental Development and Transfer of Antibiotic Resistance
Nicholas J. Ashbolt et al.
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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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J. Gregory Caporaso et al.
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A Similarity Measure for Indefinite Rankings
William Webber et al.
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Partitioning diversity into independent alpha and beta components
Lou Jost
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G Harms et al.
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rrndb: the Ribosomal RNA Operon Copy Number Database
JA Klappenbach et al.
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