Reconstitution and Transmission of Gut Microbiomes and Their Genes between Generations

Article Immunology

Vertical Transmission of Gut Microbiome and Antimicrobial Resistance Genes in Infants Exposed to Antibiotics at Birth

Weizhong Li et al.

Summary: The study found that perinatal antibiotics significantly disrupted vertical transmission of maternal microbes to infants, changing the source of gut colonization towards horizontal transfer from the environment to the infants.

JOURNAL OF INFECTIOUS DISEASES (2021)

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Review Nutrition & Dietetics

The human milk microbiome: who, what, when, where, why, and how?

Lisa F. Stinson et al.

Summary: Human milk contains a variety of microorganisms that play crucial roles in seeding infant gastrointestinal microbiome and impacting immune and metabolic development. Research on HM microbiota has increased, yet many questions remain unanswered. By comprehensively describing the composition, function, and origin of the HM microbiome, opportunities for further basic and applied research can be identified.

NUTRITION REVIEWS (2021)

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Article Pediatrics

The impact of Caesarean section on the infant gut microbiome

Delphine M. Hoang et al.

Summary: Cesarean section can lead to dysbiosis of the infant gut microbiome, potentially impacting infant health. While breastfeeding can help, other interventions like vaginal seeding and probiotics supplementation need further research to determine their effectiveness.

ACTA PAEDIATRICA (2021)

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Article Obstetrics & Gynecology

No evidence for a placental microbiome in human pregnancies at term

Irene Sterpu et al.

Summary: The study found no evidence supporting the existence of a placental microbiome in 76 term pregnancies. Incidental findings of bacterial species could be due to contamination or low-grade bacterial presence in some locations.

AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY (2021)

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Article Agriculture, Dairy & Animal Science

The influence of sex, rearing history, and personality on abnormal behaviour in zoo-housed bonobos (Pan paniscus)

Daan W. Lameris et al.

Summary: Abnormal behaviors in zoo-housed bonobos were studied, with findings showing a higher diversity of abnormal behaviors in wild-born individuals compared to mother-reared ones. The frequency of abnormal behaviors was influenced by factors such as age, sex, and personality traits, indicating a potential link between sociability and specific abnormal behaviors. These results provide valuable insights into the welfare of zoo-housed bonobos and offer a basis for further research.

APPLIED ANIMAL BEHAVIOUR SCIENCE (2021)

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Review Neurosciences

Vertical transmission of gut microbiota: Points of action of environmental factors influencing brain development

Shiro Tochitani

Summary: Environmental factors and genetics interact in early life, impacting health and disease. Offspring's gut microbiota colonization relies on maternal flora as a primary source. Various environmental factors during perinatal periods can disrupt gut microbiota colonization, affecting brain development in offspring.

NEUROSCIENCE RESEARCH (2021)

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Review Biotechnology & Applied Microbiology

Insights into the early stages of plant-endophytic bacteria interaction

Cecilia Taule et al.

Summary: The plant holobiont consists of the plant, its microbiota, and other organisms that live in and on it. Among the plant microbiota, bacterial endophytes can invade plant tissues without causing symptoms of disease. The interaction between endophytic bacterial microbiota and their plant host influences their fitness and depends on various factors.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2021)

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Article Microbiology

Horizontal Transmission of the Heritable Protective Endosymbiont Hamiltonella defensa Depends on Titre and Haplotype

Heidi Kaech et al.

Summary: The research found that isolates from different haplotypes of H. defensa differ in their capacity for horizontal transmission, with some isolates providing greater resistance to parasitoid wasps at a cost to the host. While some isolates are more readily transmitted at high cell densities, isolates of H. defensa haplotype 1 were transmitted more frequently, suggesting that endosymbionts may need specific adaptations for effective transmission between hosts.

FRONTIERS IN MICROBIOLOGY (2021)

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Article Microbiology

Lessons learned from the prenatal microbiome controversy

Martin J. Blaser et al.

Summary: Recent studies have shown that the prenatal environment is not sterile, with microbial communities present that can impact the development and health of the host. However, controversy surrounds the prenatal microbiome, focusing on issues of contamination and inconsistencies among different studies.

MICROBIOME (2021)

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Review Gastroenterology & Hepatology

The Sporobiota of the Human Gut

Muireann Egan et al.

Summary: The human gut microbiome is a diverse ecosystem that is integral to human health. Studies have shown that the formation of endospores by specific members of the gut microbiome is linked to antibiotic resistance and the spread of resistance genes, known as the resistome. This has important implications for human health, disease, and biotechnology.

GUT MICROBES (2021)

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Review Zoology

A REVIEW OF THE MOLLUSCAN MICROBIOME: ECOLOGY, METHODOLOGY AND FUTURE

Bridget Chalifour et al.

Summary: Symbiotic relationships between molluscan hosts and bacterial partners play a crucial role in biological functions and ecological interactions, providing evolutionary advantages to the hosts. Common methodologies for studying these relationships include experimental validation and strong evidence support, with many areas for further exploration in molluscan microbiome studies.

MALACOLOGIA (2021)

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Article Plant Sciences

Seed-borne, endospheric and rhizospheric core microbiota as predictors of plant functional traits across rice cultivars are dominated by deterministic processes

Junjie Guo et al.

Summary: Host-plant and microbiota mutually depend on each other, with the assembly of bacterial microbiota in different plant microhabitats shaped by deterministic processes. The presence of a core microbial community, consisting of generalist species, is key in connecting networks and predicting plant functional traits. This study enhances understanding of microbiota associations and driving mechanisms in plant microhabitats, offering new perspectives to enhance plant performance.

NEW PHYTOLOGIST (2021)

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Review Gastroenterology & Hepatology

Helicobacter pylori: Commensal, symbiont or pathogen?

Vasiliy Ivanovich Reshetnyak et al.

Summary: This review summarizes the role of Helicobacter pylori in gastrointestinal diseases, exploring both potential benefits and risks to human health. There is significant controversy in the current literature regarding the impact of H. pylori on human health.

WORLD JOURNAL OF GASTROENTEROLOGY (2021)

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Article Multidisciplinary Sciences

Persistence of functional microbiota composition across generations

Christian Ramos et al.

Summary: Vertically transmitted microbiota undergo predictable functional changes over time depending on the arrival of diverse migrants, leading to a stable functional composition state. This succession is found to be influenced by host-microbiota interaction and higher order interactions.

SCIENTIFIC REPORTS (2021)

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Article Biology

Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt

Simone Rampelli et al.

Summary: By analyzing ancient bacterial profiles from fecal sediments at the El Salt Middle Paleolithic site in Spain, researchers found evidence of a core human gut microbiome that may have been shared by Neanderthals and modern humans before their divergence. This suggests that beneficial gut commensals like Blautia, Dorea, Roseburia, Ruminococcus, Faecalibacterium, and Bifidobacterium have been present in the intestinal microbiome of Homo since the last common ancestor between humans and Neanderthals.

COMMUNICATIONS BIOLOGY (2021)

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Review Biology

When a Neonate Is Born, So Is a Microbiota

Alessandra Coscia et al.

Summary: The human microbiota plays a crucial role in promoting and modulating overall health, with factors from pre-conception to perinatal period impacting an individual's life course significantly.

LIFE-BASEL (2021)

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Editorial Material Microbiology

The Importance of Larval Stages for Considering Crab Microbiomes as a Paradigm for the Evolution of Terrestrialization

Matthew Wale et al.

FRONTIERS IN MICROBIOLOGY (2021)

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Review Microbiology

Microbial-driven genetic variation in holobionts

Ilana Zilber-Rosenberg et al.

Summary: Genetic variation in holobionts, including the host and microbiome, can be observed from both observable variations and the processes that bring about the variation. Processes of microbial-driven genetic variation include acquisition of novel microbes, amplification/reduction of certain microbes, horizontal gene transfer, and mutation. Different organisms may have different levels of genetic exchange between microbiota and host, influencing their evolution differently.

FEMS MICROBIOLOGY REVIEWS (2021)

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Article Ecology

Social networks strongly predict the gut microbiota of wild mice

Aura Raulo et al.

Summary: Research on wild mice shows that social connections play a crucial role in determining microbial similarity among individuals, especially in interactions involving males. Social network position can also predict the diversity of microbiota in individuals.

ISME JOURNAL (2021)

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Article Multidisciplinary Sciences

The endophytic microbiota of Citrus limon is transmitted from seed to shoot highlighting differences of bacterial and fungal community structures

Teresa Faddetta et al.

Summary: This study revealed for the first time the structures of endophytic microbiota of C. limon seeds and their transmission to shoots. The most abundant bacterial genera were Cutibacterium and Acinetobacter, while the most abundant fungal genera were Cladosporium and Debaryomyces.

SCIENTIFIC REPORTS (2021)

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Article Microbiology

Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson's disease individuals

Janis R. Bedarf et al.

Summary: This study utilized 16S rRNA gene sequencing to investigate the presence of a bacterial brain microbiome, finding low bacterial signals in human and murine brain samples that were primarily attributed to exogenous DNA contamination and false positive amplification of host DNA. These results underscore the importance of careful scrutiny of sequencing data from low biomass samples to avoid misinterpretations due to off-target amplifications.

MICROBIOME (2021)

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Editorial Material Ecology

DNA sequence-based biodiversity and interaction ecology

Julia Tiede et al.

BASIC AND APPLIED ECOLOGY (2021)

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Article Engineering, Environmental

Transmission Routes of the Microbiome and Resistome from Manure to Soil and Lettuce

Yuepeng Sun et al.

Summary: The application of animal manure can significantly affect the microbiome and resistome of surface soil, with manure and original soil being the main sources. Manure application alters the microbiome and resistome in the episphere of lettuce, with surface soil accounting for a large portion of the microbes and ARGs in the episphere. Manure-borne microbes and ARGs primarily reach the episphere through surface soil, with some further entering the endosphere.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2021)

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Article Biochemistry & Molecular Biology

Metagenomics: a path to understanding the gut microbiome

Sandi Yen et al.

Summary: The gut microbiome plays a critical role in host health and advancements in next-generation sequencing have allowed for genomic level studies to be conducted in the past two decades. This has led to a better understanding of the microbial community and the functions encoded in their metagenome. Advances in sequencing technologies and computational approaches have revolutionized our ability to study the microbiome, highlighting the importance of ongoing technological developments in this field.

MAMMALIAN GENOME (2021)

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Article Multidisciplinary Sciences

Surviving winter on the Qinghai-Tibetan Plateau: Pikas suppress energy demands and exploit yak feces to survive winter

John R. Speakman et al.

Summary: The plateau pikas on the Qinghai-Tibetan Plateau survive the harsh winter conditions by suppressing metabolism, lowering body temperature, reducing activity, and supplementing their food intake with yak feces. This interspecific coprophagy allows pikas to thrive in areas with higher densities of domestic yaks, their supposed competitors for food.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

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Article Multidisciplinary Sciences

Gut microbiome heritability is nearly universal but environmentally contingent

Laura Grieneisen et al.

Summary: Analysis of 16,234 gut microbiome profiles from 585 wild baboons collected over 14 years revealed that host genetic effects on the gut microbiome are nearly universal. The study found that 97% of microbiome phenotypes were significantly heritable, with heritability being greater in the dry season, with low diet diversity, and in older hosts. These findings suggest the potential for selection on microbiome characteristics as a host phenotype.

SCIENCE (2021)

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Article Microbiology

The Influence of Cesarean Section on the Composition and Development of Gut Microbiota During the First 3 Months of Life

Gao Long et al.

Summary: Cesarean section delivery significantly affects the composition and development of gut microbiota in infants, resulting in decreased relative abundance of certain bacteria and alterations in specific functional genes. The study findings provide new insights into strategies for preventing Cesarean section-related disorders in later life.

FRONTIERS IN MICROBIOLOGY (2021)

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Article Microbiology

Sympatric Yaks and Plateau Pikas Promote Microbial Diversity and Similarity by the Mutual Utilization of Gut Microbiota

Haibo Fu et al.

Summary: The plateau pika and the yak have coexisted on the Qinghai-Tibetan Plateau for over 1 million years, with their gut microbiota diversity and similarity increasing through symbiosis. The horizontally transmitted bacteria between them enrich specific metabolic pathways for mutual benefit.

MICROORGANISMS (2021)

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Review Environmental Sciences

Corals and Sponges Under the Light of the Holobiont Concept: How Microbiomes Underpin Our Understanding of Marine Ecosystems

Chloe Stevenne et al.

Summary: The concept of holobiont, which encompasses the host organism and its associated microorganisms, has gained prominence in marine biology research over the past two decades. It provides insights into the functioning, evolution, ecological roles, and adaptation of marine organisms in the face of environmental changes. Holobiont studies offer valuable information on the impact of symbiotic relationships and microbiome interactions on the resilience and vulnerability of marine ecosystems.

FRONTIERS IN MARINE SCIENCE (2021)

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Article Microbiology

Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes

Danielle Peterson et al.

Summary: This study compared the effects of profiling the human infant gut microbiome with 16S rRNA amplicon vs. shotgun metagenomic sequencing techniques, finding that changes in diversity with age were similar using both methods, and that 16S rRNA profiling identified a larger number of genera.

FRONTIERS IN MICROBIOLOGY (2021)

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Article History & Philosophy Of Science

The holobiont/hologenome as a level of selection: An approach to the evolution of multispecies systems

Javier Suarez

Summary: The debate on units or levels of selection focuses on which biological systems are stable enough to undergo natural selection, discussing the levels of interaction with the environment and reproduction. Recently, there has been discussion on whether multi-species consortia may act as a unit of selection, but this view has faced criticism.

THEORIA-REVISTA DE TEORIA HISTORIA Y FUNDAMENTOS DE LA CIENCIA (2021)

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Article Obstetrics & Gynecology

Deep microbial analysis of multiple placentas shows no evidence for a placental microbiome

A. A. Kuperman et al.

BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY (2020)

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Review Biochemistry & Molecular Biology

Maternal Vertical Transmission Affecting Early-life Microbiota Development

Shaopu Wang et al.

TRENDS IN MICROBIOLOGY (2020)

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Article Gastroenterology & Hepatology

Origins of human milk microbiota: new evidence and arising questions

Shirin Moossavi et al.

GUT MICROBES (2020)

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Article History & Philosophy Of Science

The stability of traits conception of the hologenome: An evolutionary account of holobiont individuality

Javier Suarez

HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES (2020)

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Article Plant Sciences

Improved method for vegetative propagation of mature Pinus halepensis and its hybrids by cuttings

Joseph Riov et al.

ISRAEL JOURNAL OF PLANT SCIENCES (2020)

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Review Microbiology

Microorganisms in the reproductive tissues of arthropods

Jessamyn Perlmutter et al.

NATURE REVIEWS MICROBIOLOGY (2020)

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Article Fisheries

Gut microbiota metagenomics in aquaculture: factors influencing gut microbiome and its physiological role in fish

Kumarasan Yukgehnaish et al.

REVIEWS IN AQUACULTURE (2020)

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Article Microbiology

Prenatal Transfer of Gut Bacteria in Rock Pigeon

Maurine W. Dietz et al.

MICROORGANISMS (2020)

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Review Ecology

Origin of Mutualism Between Termites and Flagellated Gut Protists: Transition From Horizontal to Vertical Transmission

Christine A. Nalepa

FRONTIERS IN ECOLOGY AND EVOLUTION (2020)

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Article Multidisciplinary Sciences

Diversity, compositional and functional differences between gut microbiota of children and adults

Djawad Radjabzadeh et al.

SCIENTIFIC REPORTS (2020)

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Review Ecology

Metacommunity theory for transmission of heritable symbionts within insect communities

Joel J. Brown et al.

ECOLOGY AND EVOLUTION (2020)

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Article Biology

The role of the microbiome in the neurobiology of social behaviour

Amar Sarkar et al.

BIOLOGICAL REVIEWS (2020)

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Review Cell Biology

Interaction between microbiota and immunity in health and disease

Danping Zheng et al.

CELL RESEARCH (2020)

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Review Microbiology

Milk Microbiota: What Are We Exactly Talking About?

Georgios Oikonomou et al.

FRONTIERS IN MICROBIOLOGY (2020)

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Review Construction & Building Technology

Close contact behavior in indoor environment and transmission of respiratory infection

Nan Zhang et al.

INDOOR AIR (2020)

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Editorial Material Ecology

Applying the core microbiome to understand host-microbe systems

Alice Risely

JOURNAL OF ANIMAL ECOLOGY (2020)

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Article Microbiology

Interactions of Symbiotic Partners Drive the Development of a Complex Biogeography in the Squid-Vibrio Symbiosis

Tara Essock-Burns et al.

MBIO (2020)

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Article Microbiology

Design of Bacterial Strain-Specific qPCR Assays Using NGS Data and Publicly Available Resources and Its Application to Track Biocontrol Strains

Iker Hernandez et al.

FRONTIERS IN MICROBIOLOGY (2020)

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Review Ecology

Cooperation and Conflict Within the Microbiota and Their Effects On Animal Hosts

Alexandre R. T. Figueiredo et al.

FRONTIERS IN ECOLOGY AND EVOLUTION (2020)

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Article Biology

Morphallaxis versus Epimorphosis? Cellular and Molecular Aspects of Regeneration and Asexual Reproduction in Annelids

R. P. Kostyuchenko et al.

BIOLOGY BULLETIN (2020)

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Article Microbiology

Comparison of Meconium Microbiome in Dizygotic and Monozygotic Twins Born by Caesarean Section (CS)

Jing Yang et al.

FRONTIERS IN MICROBIOLOGY (2020)

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Article Microbiology

Microbiota in the Rhizosphere and Seed of Rice From China, With Reference to Their Transmission and Biogeography

Xin Zhou et al.

FRONTIERS IN MICROBIOLOGY (2020)

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Article Microbiology

The Composition and Function of Pigeon Milk Microbiota Transmitted From Parent Pigeons to Squabs

Jinmei Ding et al.

FRONTIERS IN MICROBIOLOGY (2020)

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Article Ecology

Coprophagy prevention alters microbiome, metabolism, neurochemistry, and cognitive behavior in a small mammal

Ting-Bei Bo et al.

ISME JOURNAL (2020)

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Article Genetics & Heredity

Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

Franziska Wemheuer et al.

ENVIRONMENTAL MICROBIOME (2020)

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Review Microbiology

Plant-microbiome interactions: from community assembly to plant health

Pankaj Trivedi et al.

NATURE REVIEWS MICROBIOLOGY (2020)

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Article Multidisciplinary Sciences

Evidence for contamination as the origin for bacteria found in human placenta rather than a microbiota

Remi Gschwind et al.

PLOS ONE (2020)

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Review Genetics & Heredity

Host-parasite co-evolution and its genomic signature

Dieter Ebert et al.

NATURE REVIEWS GENETICS (2020)

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Review Nutrition & Dietetics

Factors affecting early-life intestinal microbiota development

Yvan Vandenplas et al.

NUTRITION (2020)

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Review Biology

Transmission efficiency drives host-microbe associations

Philip T. Leftwich et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)

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Review Environmental Sciences

Transmission of the sponge microbiome: moving towards a unified model

Bruno Francesco Rodrigues de Oliveira et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2020)

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Article Multidisciplinary Sciences

A pioneer calf foetus microbiome

Cesar E. Guzman et al.

SCIENTIFIC REPORTS (2020)

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Article Genetics & Heredity

Horizontal transmission and recombination maintain forever young bacterial symbiont genomes

Shelbi L. Russell et al.

PLOS GENETICS (2020)

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Article Multidisciplinary Sciences

Deciphering functional redundancy in the human microbiome

Liang Tian et al.

NATURE COMMUNICATIONS (2020)

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Review Immunology

The Microbiota of the Human Mammary Ecosystem

Leonides Fernandez et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2020)

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Article Environmental Sciences

Does Depth Matter? Reproduction Pattern Plasticity in Two Common Sponge Species Found in Both Mesophotic and Shallow Waters

Tal Idan et al.

FRONTIERS IN MARINE SCIENCE (2020)

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Article Microbiology

Vertically Transmitted Gut Bacteria and Nutrition Influence the Immunity and Fitness of Bactrocera dorsalis Larvae

Babar Hassan et al.

FRONTIERS IN MICROBIOLOGY (2020)

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Review Oncology

Pathogenicity of Helicobacter pylori in cancer development and impacts of vaccination

Hadi Maleki Kakelar et al.

GASTRIC CANCER (2019)

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Article Biotechnology & Applied Microbiology

Environmental Sources of Bacteria and Genetic Variation in Behavior Influence Host-Associated Microbiota

Alexandra A. Mushegian et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2019)

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Article Biodiversity Conservation

Conserve the germs: the gut microbiota and adaptive potential

Heidi C. Hauffe et al.

CONSERVATION GENETICS (2019)

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Article Food Science & Technology

Microwave heat treatment application to pasteurization of human milk

Malinowska-Panczyk Edyta et al.

INNOVATIVE FOOD SCIENCE & EMERGING TECHNOLOGIES (2019)

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Article Multidisciplinary Sciences

Close social relationships correlate with human gut microbiota composition

Kimberly A. Dill-McFarland et al.

SCIENTIFIC REPORTS (2019)

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Article Biochemistry & Molecular Biology

A census-based estimate of Earth's bacterial and archaeal diversity

Stilianos Louca et al.

PLOS BIOLOGY (2019)

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Review Pediatrics

Shaping the Gut Microbiota by Breastfeeding: The Gateway to Allergy Prevention?

Lieke W. J. van den Elsen et al.

FRONTIERS IN PEDIATRICS (2019)

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Article Microbiology

Transmission of human-associated microbiota along family and social networks

Ilana L. Brito et al.

NATURE MICROBIOLOGY (2019)

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Review Multidisciplinary Sciences

What is new and relevant for sequencing-based microbiome research? A mini-review

Alena M. Fricker et al.

JOURNAL OF ADVANCED RESEARCH (2019)

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Review Multidisciplinary Sciences

A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application

Stephane Compant et al.

JOURNAL OF ADVANCED RESEARCH (2019)

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Article Obstetrics & Gynecology

Visualization of microbes by 16S in situ hybridization in term and preterm placentas without intraamniotic infection

Maxim D. Seferovic et al.

AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY (2019)

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Article Ecology

Rethinking gut microbiome residency and the Enterobacteriaceae in healthy human adults

Jonathan N. Martinson et al.

ISME JOURNAL (2019)

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Article Nutrition & Dietetics

Strong Multivariate Relations Exist Among Milk, Oral, and Fecal Microbiomes in Mother-Infant Dyads During the First Six Months Postpartum

Janet E. Williams et al.

JOURNAL OF NUTRITION (2019)

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Review Biochemistry & Molecular Biology

The Life of an Insect Endosymbiont from the Cradle to the Grave

John P. McCutcheon et al.

CURRENT BIOLOGY (2019)

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Article Biochemistry & Molecular Biology

Characterizing symbiont inheritance during host-microbiota evolution: Application to the great apes gut microbiota

Benoit Perez-Lamarque et al.

MOLECULAR ECOLOGY RESOURCES (2019)

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Article Multidisciplinary Sciences

Human placenta has no microbiome but can contain potential pathogens

Marcus C. de Goffau et al.

NATURE (2019)

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Article Multidisciplinary Sciences

Characterization of microbial communities in the chicken oviduct and the origin of chicken embryo gut microbiota

Sangwon Lee et al.

SCIENTIFIC REPORTS (2019)

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Article Microbiology

Establishment of Coral-Bacteria Symbioses Reveal Changes in the Core Bacterial Community With Host Ontogeny

Rachele Bernasconi et al.

FRONTIERS IN MICROBIOLOGY (2019)

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Article Ecology

Vertical transmission of sponge microbiota is inconsistent and unfaithful

Johannes R. Bjoerk et al.

NATURE ECOLOGY & EVOLUTION (2019)

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Article Agriculture, Dairy & Animal Science

Exploration of potential triggers for self-directed behaviours and regurgitation and reingestion in zoo-housed chimpanzees

Emma K. Wallace et al.

APPLIED ANIMAL BEHAVIOUR SCIENCE (2019)

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Review Microbiology

Leveraging non-human primates for exploring the social transmission of microbes

Sahana Kuthyar et al.

CURRENT OPINION IN MICROBIOLOGY (2019)

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Article Environmental Sciences

Transfer of antibiotic resistance from manure-amended soils to vegetable microbiomes

Yu-Jing Zhang et al.

ENVIRONMENT INTERNATIONAL (2019)

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Article Ecology

Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated

Devani Romero Picazo et al.

ISME JOURNAL (2019)

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Review Microbiology

Scales of persistence: transmission and the microbiome

Catherine D. Robinson et al.

CURRENT OPINION IN MICROBIOLOGY (2019)

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Review Multidisciplinary Sciences

Microbiota and the social brain

Eoin Sherwin et al.

SCIENCE (2019)

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Article Multidisciplinary Sciences

Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life

Marta Reyman et al.

NATURE COMMUNICATIONS (2019)

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Article Multidisciplinary Sciences

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

Jethro S. Johnson et al.

NATURE COMMUNICATIONS (2019)

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Article Multidisciplinary Sciences

Metabolism of the predominant human milk oligosaccharide fucosyllactose by an infant gut commensal

Kieran James et al.

SCIENTIFIC REPORTS (2019)

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Article Multidisciplinary Sciences

Intra-individual heteroplasmy in the Gentiana tongolensis plastid genome (Gentianaceae)

Shan-Shan Sun et al.

PEERJ (2019)

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Review Genetics & Heredity

Intergenerational Transmission of Characters Through Genetics, Epigenetics, Microbiota, and Learning in Livestock

Ingrid David et al.

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Transmission mode is associated with environment type and taxa across bacteria-eukaryote symbioses: a systematic review and meta-analysis

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Study of Microbiomes in Aseptically Collected Samples of Human Breast Tissue Using Needle Biopsy and the Potential Role of in situ Tissue Microbiomes for Promoting Malignancy

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Consumption of Mediterranean versus Western Diet Leads to Distinct Mammary Gland Microbiome Populations

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Reciprocal Interactions Between Gut Microbiota and Host Social Behavior

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The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota

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Is the plant-associated microbiota of Thymus spp. adapted to plant essential oil?

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RESEARCH IN MICROBIOLOGY (2017)

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Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow's Capacity To Harvest Energy from Its Feed

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Does the maternal vaginal microbiota play a role in seeding the microbiota of neonatal gut and nose?

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Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine

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Correction: A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota

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Horizontal Transmission of Intracellular Insect Symbionts via Plants

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Seed and Root Endophytic Fungi in a Range Expanding and a Related Plant Species

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Inheritance and Establishment of Gut Microbiota in Chickens

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Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

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Frontiers in Genetics (2017)

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Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

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MSYSTEMS (2017)

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The Composition of Human Milk and Infant Faecal Microbiota Over the First Three Months of Life: A Pilot Study

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SCIENTIFIC REPORTS (2017)

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Contributions of the maternal oral and gut microbiome to placental microbial colonization in overweight and obese pregnant women

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SCIENTIFIC REPORTS (2017)

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The Influence of Different Maternal Microbial Communities on the Development of Infant Gut and Oral Microbiota

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SCIENTIFIC REPORTS (2017)

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Vertically and horizontally transmitted microbial symbionts shape the gut microbiota ontogenesis of a skin-mucus feeding discus fish progeny

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SCIENTIFIC REPORTS (2017)

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Multiple Approaches Detect the Presence of Fungi in Human Breastmilk Samples from Healthy Mothers

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SCIENTIFIC REPORTS (2017)

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The Origin and Diversification of Mitochondria

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Gut Microbiota Colonization and Transmission in the Burying Beetle Nicrophorus vespilloides throughout Development

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APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)

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The Microbiota of Breast Tissue and Its Association with Breast Cancer

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Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation

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Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

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Cospeciation of gut microbiota with hominids

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Gut Microbiotas and Host Evolution: Scaling Up Symbiosis

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Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples

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GUT PATHOGENS (2016)

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Impact and Influence of the Natural Vibrio-Squid Symbiosis in Understanding Bacterial-Animal Interactions

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Can They Make It on Their Own? Hosts, Microbes, and the Holobiont Niche

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FRONTIERS IN MICROBIOLOGY (2016)

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Social behavior shapes the chimpanzee pan-microbiome

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Microbiota in Breast Milk of Chinese Lactating Mothers

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Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid

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SCIENTIFIC REPORTS (2016)

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Biodiversity and Activity of the Gut Microbiota across the Life History of the Insect Herbivore Spodoptera littoralis

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Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

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ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 46 (2015)

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The Gut Microbiota of Termites: Digesting the Diversity in the Light of Ecology and Evolution

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ANNUAL REVIEW OF MICROBIOLOGY, VOL 69 (2015)

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Exploring Vertical Transmission of Bifidobacteria from Mother to Child

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APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

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Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

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Analyses of Intestinal Microbiota: Culture versus Sequencing

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Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes

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The Hologenome Concept: Helpful or Hollow?

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Social networks predict gut microbiome composition in wild baboons

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ANNUAL REVIEW OF MICROBIOLOGY, VOL 68 (2014)

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The Importance of Microbes in Animal Development: Lessons from the Squid-Vibrio Symbiosis

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ANNUAL REVIEW OF MICROBIOLOGY, VOL 68 (2014)

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Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes

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Direct evidence for maternal inheritance of bacterial symbionts in small deep-sea clams (Bivalvia: Vesicomyidae)

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The Placenta Harbors a Unique Microbiome

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The Origin of Human Milk Bacteria: Is There a Bacterial Entero-Mammary Pathway during Late Pregnancy and Lactation?

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ADVANCES IN NUTRITION (2014)

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Shaping the oral microbiota through intimate kissing

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The Epidemiology and Evolution of Symbionts with Mixed-Mode Transmission

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The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis

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Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model

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Analyses of the Stability and Core Taxonomic Memberships of the Human Microbiome

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PLOS ONE (2013)

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Diverse Strategies for Vertical Symbiont Transmission among Subsocial Stinkbugs

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The human milk microbiota: Origin and potential roles in health and disease

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PHARMACOLOGICAL RESEARCH (2013)

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Mom Knows Best: The Universality of Maternal Microbial Transmission

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Cohabiting family members share microbiota with one another and with their dogs

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Age-related differences in the cloacal microbiota of a wild bird species

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Barriers to Male Transmission of Mitochondrial DNA in Sperm Development

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Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

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Mechanisms and fitness effects of antibacterial defences in a carrion beetle

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