4.5 Article

Comparative genomics and evolutionary analysis of Lactococcus garvieae isolated from human endocarditis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Infectious Diseases

Infectious Spondylitis and Septicemia due to Lactococcus garvieae: a Literature Review of Non-Endocarditis Cases

Ji Yeon Lee et al.

Summary: This study reports a case of infectious spondylitis caused by Lactococcus garvieae, confirmed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOFMS). It is the first report of spondylitis caused by L. garvieae in Korea. Additionally, the study reviews non-endocarditis cases of L. garvieae reported in the English-language literature to summarize their clinical features and outcomes.

INFECTION AND CHEMOTHERAPY (2023)

Article Biochemistry & Molecular Biology

Evolutionary Processes in the Emergence and Recent Spread of the Syphilis Agent, Treponema pallidum

Marta Pla-Diaz et al.

Summary: The incidence of syphilis is increasing globally, and recombination and selection among the Treponema pallidum subspecies play an important role in the evolution and spread of the bacteria causing syphilis.

MOLECULAR BIOLOGY AND EVOLUTION (2022)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Medicine, General & Internal

Lactococcus garvieae Endocarditis in a Prosthetic Aortic Valve: A Case Report and Literature Review

Romina Maria Roesch et al.

JOURNAL OF INVESTIGATIVE MEDICINE HIGH IMPACT CASE REPORTS (2019)

Review Genetics & Heredity

The Evolution of Bacterial Genome Architecture

Louis-Marie Bobay et al.

FRONTIERS IN GENETICS (2017)

Article Multidisciplinary Sciences

Characterization of prophages of Lactococcus garvieae

Giovanni Eraclio et al.

SCIENTIFIC REPORTS (2017)

Review Fisheries

Lactococcus garvieae: an emerging bacterial pathogen of fish

C. M. Meyburgh et al.

DISEASES OF AQUATIC ORGANISMS (2017)

Review Chemistry, Analytical

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

Leighton Pritchard et al.

ANALYTICAL METHODS (2016)

Article Infectious Diseases

Genetic analysis of human clinical isolates of Lactococcus garvieae: Relatedness with isolates from foods

Mercedes Reguera-Brito et al.

INFECTION GENETICS AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Phylo.io: Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web

Oscar Robinson et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

PHASTER: a better, faster version of the PHAST phage search tool

David Arndt et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Genetics & Heredity

Insertion sequence elements in Lactococcus garvieae

Giovanni Eraclio et al.

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biotechnology & Applied Microbiology

Circlator: automated circularization of genome assemblies using long sequencing reads

Martin Hunt et al.

GENOME BIOLOGY (2015)

Article Biochemical Research Methods

circlize implements and enhances circular visualization in R

Zuguang Gu et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Review Microbiology

Bacterial insertion sequences: their genomic impact and diversity

Patricia Siguier et al.

FEMS MICROBIOLOGY REVIEWS (2014)

Article Microbiology

The Comprehensive Antibiotic Resistance Database

Andrew G. McArthur et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2013)

Article Microbiology

First Report of Human Acute Acalculous Cholecystitis Caused by the Fish Pathogen Lactococcus garvieae

Ji Hyung Kim et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

Ultrafast Approximation for Phylogenetic Bootstrap

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemical Research Methods

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Chen-Shan Chin et al.

NATURE METHODS (2013)

Article Microbiology

Characterization of Lactococcus lactis isolates from bovine mastitis

Carme Plumed-Ferrer et al.

VETERINARY MICROBIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Garvieacin Q, a Novel Class II Bacteriocin from Lactococcus garvieae BCC 43578

Amonlaya Tosukhowong et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

Staphylococcus aureus Staphopain A inhibits CXCR2-dependent neutrophil activation and chemotaxis

Alexander J. Laarman et al.

EMBO JOURNAL (2012)

Article Multidisciplinary Sciences

Characterization of Plasmids in a Human Clinical Strain of Lactococcus garvieae

Monica Aguado-Urda et al.

PLOS ONE (2012)

Article Biotechnology & Applied Microbiology

Plasmids of Raw Milk Cheese Isolate Lactococcus lactis subsp lactis Biovar diacetylactis DPC3901 Suggest a Plant-Based Origin for the Strain

Vincenzo Fallico et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biochemical Research Methods

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

Marcus Lechner et al.

BMC BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

A genetic comparison of pig, cow and trout isolates of Lactococcus garvieae by PFGE analysis

J. L. Tejedor et al.

LETTERS IN APPLIED MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae

Hidetoshi Morita et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez et al.

PLOS ONE (2011)

Article Biochemical Research Methods

DNAPlotter: circular and linear interactive genome visualization

Tim Carver et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Shifting the genomic gold standard for the prokaryotic species definition

Michael Richter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biotechnology & Applied Microbiology

The RAST server: Rapid annotations using subsystems technology

Ramy K. Aziz et al.

BMC GENOMICS (2008)

Article Food Science & Technology

Bacterial biodiversity of traditional Zabady fermented milk

G. El-Baradei et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2008)

Article Microbiology

Genes required for Lactococcus garvieae survival in a fish host

Aurora Menendez et al.

MICROBIOLOGY-SGM (2007)

Article Biochemistry & Molecular Biology

Genes under positive selection in Escherichia coli

Lise Petersen et al.

GENOME RESEARCH (2007)

Article Biotechnology & Applied Microbiology

Phenotypic typing, technological properties and safety aspects of Lactococcus garvieae strains from dairy environments

M. G. Fortina et al.

JOURNAL OF APPLIED MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Evolution of the core and pan-genome of Strepococcus: positive selection, recombination, and genome composition

Tristan Lefebure et al.

GENOME BIOLOGY (2007)

Article Medicine, General & Internal

Lactococcus garvieae infections in humans: possible association with aquaculture outbreaks

C-Y C. Wang et al.

INTERNATIONAL JOURNAL OF CLINICAL PRACTICE (2007)

Review Microbiology

Plasmids of lactococci - genetic accessories or genetic necessities?

S Mills et al.

FEMS MICROBIOLOGY REVIEWS (2006)

Article Biochemistry & Molecular Biology

ISfinder: the reference centre for bacterial insertion sequences

P. Siguier et al.

NUCLEIC ACIDS RESEARCH (2006)

Review Genetics & Heredity

The evolutionary genomics of pathogen recombination

P Awadalla

NATURE REVIEWS GENETICS (2003)

Article Biology

Inferring confidence sets of possibly misspecified gene trees

K Strimmer et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2002)

Article Genetics & Heredity

ORF-FINDER: a vector for high-throughput gene identification

IT Rombel et al.

Article Agriculture, Dairy & Animal Science

DNA sequence analysis of three Lactococcus lactis plasmids encoding phage resistance mechanisms

I Boucher et al.

JOURNAL OF DAIRY SCIENCE (2001)

Article Multidisciplinary Sciences

Staphylococcus aureus sortase mutants defective in the display of surface proteins and in the pathogenesis of animal infections

SK Mazmanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)

Review Multidisciplinary Sciences

A whole-genome assembly of Drosophila

EW Myers et al.

SCIENCE (2000)