相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Human 5′ UTR design and variant effect prediction from a massively parallel translation assay
Paul J. Sample et al.
NATURE BIOTECHNOLOGY (2019)
A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters
Deniz Demircioglu et al.
CELL (2019)
Quantitative principles of cis-translational control by general mRNA sequence features in eukaryotes
Jingyi Jessica Li et al.
GENOME BIOLOGY (2019)
Pervasive, Coordinated Protein-Level Changes Driven by Transcript Isoform Switching during Meiosis
Ze Cheng et al.
CELL (2018)
Non-invasive measurement of mRNA decay reveals translation initiation as the major determinant of mRNA stability
Leon Y. Chan et al.
ELIFE (2018)
Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner
Neha Gupta et al.
ELIFE (2018)
Quantitating translational control: mRNA abundance-dependent and independent contributions and the mRNA sequences that specify them
Jingyi Jessica Li et al.
NUCLEIC ACIDS RESEARCH (2017)
Translation initiation factor eIF4G1 preferentially binds yeast transcript leaders containing conserved oligo-uridine motifs
Boris Zinshteyn et al.
RNA (2017)
Absolute Quantification of Protein and mRNA Abundances Demonstrate Variability in Gene-Specific Translation Efficiency in Yeast
Petri-Jaan Lahtvee et al.
CELL SYSTEMS (2017)
Upstream ORFs are prevalent translational repressors in vertebrates
Timothy G. Johnstone et al.
EMBO JOURNAL (2016)
Pervasive isoform-specific translational regulation via alternative transcription start sites in mammals
Xi Wang et al.
MOLECULAR SYSTEMS BIOLOGY (2016)
Dynamics of ribosome scanning and recycling revealed by translation complex profiling
Stuart K. Archer et al.
NATURE (2016)
Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation
David E. Weinberg et al.
CELL REPORTS (2016)
Tunable protein synthesis by transcript isoforms in human cells
Stephen N. Floor et al.
ELIFE (2016)
Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A
Neelam Dabas Sen et al.
GENOME RESEARCH (2015)
The MEME Suite
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2015)
RNA Bind-n-Seq: Quantitative Assessment of the Sequence and Structural Binding Specificity of RNA Binding Proteins
Nicole Lambert et al.
MOLECULAR CELL (2014)
Genome-wide identification of transcript start and end sites by transcript isoform sequencing
Vicent Pelechano et al.
NATURE PROTOCOLS (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Optimized Extract Preparation Methods and Reaction Conditions for Improved Yeast Cell-Free Protein Synthesis
C. Eric Hodgman et al.
BIOTECHNOLOGY AND BIOENGINEERING (2013)
Roles for transcript leaders in translation and mRNA decay revealed by transcript leader sequencing
Joshua A. Arribere et al.
GENOME RESEARCH (2013)
Protein synthesis rate is the predominant regulator of protein expression during differentiation
Anders R. Kristensen et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
Extensive transcriptional heterogeneity revealed by isoform profiling
Vicent Pelechano et al.
NATURE (2013)
Deciphering the rules by which 5′-UTR sequences affect protein expression in yeast
Shlomi Dvir et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Extensive Transcript Diversity and Novel Upstream Open Reading Frame Regulation in Yeast
Karl Waern et al.
G3-GENES GENOMES GENETICS (2013)
New Universal Rules of Eukaryotic Translation Initiation Fidelity
Hadas Zur et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation
Mai Sun et al.
GENOME RESEARCH (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads
Haibin Xu et al.
PLOS ONE (2012)
Alternative transcription start site selection leads to large differences in translation activity in yeast
Maria F. Rojas-Duran et al.
RNA (2012)
Depletion of eIF4G from yeast cells narrows the range of translational efficiencies genome-wide
Eun-Hee Park et al.
BMC GENOMICS (2011)
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
Riu Yamashita et al.
GENOME RESEARCH (2011)
Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development
Sharmistha Pal et al.
GENOME RESEARCH (2011)
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
Christian Miller et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Alternative Ways to Think about Cellular Internal Ribosome Entry
Wendy V. Gilbert
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
The 5′-7-Methylguanosine Cap on Eukaryotic mRNAs Serves Both to Stimulate Canonical Translation Initiation and to Block an Alternative Pathway
Sarah F. Mitchell et al.
MOLECULAR CELL (2010)
Toward a structural understanding of IRES RNA function
Megan E. Filbin et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)
Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
Nicholas T. Ingolia et al.
SCIENCE (2009)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes
So Nakagawa et al.
NUCLEIC ACIDS RESEARCH (2008)
Cap-independent translation is required for starvation-induced differentiation in yeast
Wendy V. Gilbert et al.
SCIENCE (2007)
Genome-wide analysis of mammalian promoter architecture and evolution
Piero Carninci et al.
NATURE GENETICS (2006)
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
K Kimura et al.
GENOME RESEARCH (2006)
RNA-binding activity of translation initiation factor eIF4G1 from Saccharomyces cerevisiae
C Berset et al.
RNA (2003)
分享论文
