4.8 Article

Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Ecology

What drives study-dependent differences in distance-decay relationships of microbial communities?

Dave R. Clark et al.

Summary: The study found that ecological and methodological factors significantly impact the strength of microbial distance-decay relationships. Soils showed significantly weaker distance-decay relationships compared to other habitats, while sequencing depth and choice of dissimilarity metric also influenced the strength of these relationships.

GLOBAL ECOLOGY AND BIOGEOGRAPHY (2021)

Article Biology

A novel ATP dependent dimethylsulfoniopropionate lyase in bacteria that releases dimethyl sulfide and acryloyl-CoA

Chun-Yang Li et al.

Summary: DMSP is an important organosulfur molecule in marine environments, and DddX is a novel ATP-dependent DMSP lyase with a distinct catalytic mechanism, potentially playing a significant role in DMSP/DMS cycles.
Article Biochemical Research Methods

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

Pierre-Alain Chaumeil et al.

BIOINFORMATICS (2020)

Article Biochemistry & Molecular Biology

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

I-Min A. Chen et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biotechnology & Applied Microbiology

Structure-Function Analysis Indicates that an Active-Site Water Molecule Participates in Dimethylsulfoniopropionate Cleavage by DddK

Ming Peng et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2019)

Article Microbiology

Microdiversity and temporal dynamics of marine bacterial dimethylsulfoniopropionate genes

Brent Nowinski et al.

ENVIRONMENTAL MICROBIOLOGY (2019)

Article Microbiology

Methanethiol and Dimethylsulfide Cycling in Stiffkey Saltmarsh

Ornella Carrion et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Microbiology

Bacteria are important dimethylsulfoniopropionate producers in coastal sediments

Beth T. Williams et al.

NATURE MICROBIOLOGY (2019)

Article Biochemistry & Molecular Biology

Dimethylsulfoniopropionate biosynthesis in a diatom Thalassiosira pseudonana: Identification of a gene encoding MTHB-methyltransferase

Hakuto Kageyama et al.

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2018)

Article Multidisciplinary Sciences

Impact of sea-ice melt on dimethyl sulfide (sulfoniopropionate) inventories in surface waters of Marguerite Bay, West Antarctic Peninsula

Jacqueline Stefels et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES (2018)

Article Multidisciplinary Sciences

Sinking particles promote vertical connectivity in the ocean microbiome

Mireia Mestre et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Microbiology

DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton

Andrew R. J. Curson et al.

NATURE MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

The metabolite dimethylsulfoxonium propionate extends the marine organosulfur cycle

Kathleen Thume et al.

NATURE (2018)

Article Ecology

Methanethiol-dependent dimethylsulfide production in soil environments

Ornella Carrion et al.

ISME JOURNAL (2017)

Article Biochemistry & Molecular Biology

Mechanistic Insights into Dimethylsulfoniopropionate Lyase DddY, a New Member of the Cupin Superfamily

Chun-Yang Li et al.

JOURNAL OF MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Structural mechanism for bacterial oxidation of oceanic trimethylamine into trimethylamine N-oxide

Chun-Yang Li et al.

MOLECULAR MICROBIOLOGY (2017)

Article Microbiology

Evolution of Dimethylsulfoniopropionate Metabolism in Marine Phytoplankton and Bacteria

Hannah A. Bullock et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

Assembly: a resource for assembled genomes at NCBI

Paul A. Kitts et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Chemistry, Analytical

Dimethylated sulfur compounds in coral-reef ecosystems

Elisabeth Deschaseaux et al.

ENVIRONMENTAL CHEMISTRY (2016)

Article Multidisciplinary Sciences

Structure and function of the global ocean microbiome

Shinichi Sunagawa et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

A novel pathway producing dimethylsulphide in bacteria is widespread in soil environments

O. Carrion et al.

NATURE COMMUNICATIONS (2015)

Article Meteorology & Atmospheric Sciences

Quantifying the impacts of an updated global dimethyl sulfide climatology on cloud microphysics and aerosol radiative forcing

Anoop S. Mahajan et al.

JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES (2015)

Article Biochemistry & Molecular Biology

DddD Is a CoA-Transferase/Lyase Producing Dimethyl Sulfide in the Marine Environment

Uria Acolombri et al.

BIOCHEMISTRY (2014)

Article Multidisciplinary Sciences

Molecular insight into bacterial cleavage of oceanic dimethylsulfoniopropionate into dimethyl sulfide

Chun-Yang Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemical Research Methods

Metagenomic species profiling using universal phylogenetic marker genes

Shinichi Sunagawa et al.

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Marine bacteria exhibit a bipolar distribution

Woo Jun Sul et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Ice-Shelf Melting Around Antarctica

E. Rignot et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Antarctic ice-sheet loss driven by basal melting of ice shelves

H. D. Pritchard et al.

NATURE (2012)

Review Microbiology

Beyond biogeographic patterns: processes shaping the microbial landscape

China A. Hanson et al.

NATURE REVIEWS MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees

Huangkai Zhang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Pole-to-pole biogeography of surface and deep marine bacterial communities

Jean-Francois Ghiglione et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique

David J. Schuller et al.

PROTEIN SCIENCE (2012)

Article Oceanography

Spatial variability and temporal dynamics of surface water pCO2, ΔO2/Ar and dimethylsulfide in the Ross Sea, Antarctica

P. D. Tortell et al.

DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2011)

Article Geosciences, Multidisciplinary

High concentrations and turnover rates of DMS, DMSP and DMSO in Antarctic sea ice

Elizabeth C. Asher et al.

GEOPHYSICAL RESEARCH LETTERS (2011)

Article Environmental Sciences

An updated climatology of surface dimethlysulfide concentrations and emission fluxes in the global ocean

A. Lana et al.

GLOBAL BIOGEOCHEMICAL CYCLES (2011)

Book Review Social Sciences, Mathematical Methods

ggplot2: Elegant Graphics for Data Analysis

Cedric Ginestet

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY (2011)

Article Multidisciplinary Sciences

Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase

Yin Chen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biotechnology & Applied Microbiology

Deep Sequencing of a Dimethylsulfoniopropionate-Degrading Gene (dmdA) by Using PCR Primer Pairs Designed on the Basis of Marine Metagenomic Data

Vanessa A. Varaljay et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Oceanography

Occurrence and turnover of DMSP and DMS in deep waters of the Ross Sea, Antarctica

Alison N. Rellinger et al.

DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2009)

Article Biochemistry & Molecular Biology

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

Morgan N. Price et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Limnology

Reduction of dimethylsulfoxide to dimethylsulfide by marine phytoplankton

Christopher E. Spiese et al.

LIMNOLOGY AND OCEANOGRAPHY (2009)

Article Multidisciplinary Sciences

Southern Ocean deep-water carbon export enhanced by natural iron fertilization

Raymond T. Pollard et al.

NATURE (2009)

Article Microbiology

Abundant and diverse bacteria involved in DMSP degradation in marine surface waters

Erinn C. Howard et al.

ENVIRONMENTAL MICROBIOLOGY (2008)

Article Chemistry, Multidisciplinary

Methane cycling in Arctic shelf water and its relationship with phytoplankton biomass and DMSP

E. Damm et al.

MARINE CHEMISTRY (2008)

Article Limnology

Biogas (CO2, O2, dimethylsulfide) dynamics in spring Antarctic fast ice

Bruno Delille et al.

LIMNOLOGY AND OCEANOGRAPHY (2007)

Article Oceanography

The Sulfur Cycle

Stefan M. Sievert et al.

OCEANOGRAPHY (2007)

Article Multidisciplinary Sciences

Bacterial taxa that limit sulfur flux from the ocean

Erinn C. Howard et al.

SCIENCE (2006)

Article Multidisciplinary Sciences

Environmental genome shotgun sequencing of the Sargasso Sea

JC Venter et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Characterization of the redox centers in dimethyl sulfide dehydrogenase from Rhodovulum sulfidophilum

CA McDevitt et al.

BIOCHEMISTRY (2002)

Article Computer Science, Interdisciplinary Applications

Interactive analysis and visualization of geoscience data with Ocean Data View

R Schlitzer

COMPUTERS & GEOSCIENCES (2002)

Article Multidisciplinary Sciences

An antioxidant function for DMSP and DMS in marine algae

W Sunda et al.

NATURE (2002)

Article Oceanography

DMSP removal and DMSO production in sedimenting particulate matter in the northern North Sea

AD Hatton

DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2002)

Article Oceanography

Vernal distribution of dimethylsulphide, dimethylsulphoniopropionate, and dimethylsulphoxide in the North Water in 1998

RC Bouillon et al.

DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2002)