相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Metagenomics Approaches for the Detection and Surveillance of Emerging and Recurrent Plant Pathogens
Edoardo Piombo et al.
MICROORGANISMS (2021)
Plant nutrient-acquisition strategies drive topsoil microbiome structure and function
Mohammad Bahram et al.
NEW PHYTOLOGIST (2020)
Farm-scale carbon and nitrogen fluxes in pastoral dairy production systems using different nitrogen fertilizer regimes
Pierre C. Beukes et al.
NUTRIENT CYCLING IN AGROECOSYSTEMS (2020)
Sward type alters the relative abundance of members of the rumen microbial ecosystem in dairy cows
Paul E. Smith et al.
SCIENTIFIC REPORTS (2020)
Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
Samiran Banerjee et al.
ISME JOURNAL (2019)
Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils
Zhi-Bo Zhao et al.
MICROBIOME (2019)
Rumen and Fecal Microbial Community Structure of Holstein and Jersey Dairy Cows as Affected by Breed, Diet, and Residual Feed Intake
Samantha J. Noel et al.
ANIMALS (2019)
Plant-microbe networks in soil are weakened by century-long use of inorganic fertilizers
Ruilin Huang et al.
MICROBIAL BIOTECHNOLOGY (2019)
Rumen microbial responses to supplemental nitrate. II. Potential interactions with live yeast culture on the prokaryotic community and methanogenesis in continuous culture
C. M. Welty et al.
JOURNAL OF DAIRY SCIENCE (2019)
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
Rolf Henrik Nilsson et al.
NUCLEIC ACIDS RESEARCH (2019)
The microbial nitrogen-cycling network
Marcel M. M. Kuypers et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Decreasing soil microbial diversity is associated with decreasing microbial biomass under nitrogen addition
Chao Wang et al.
SOIL BIOLOGY & BIOCHEMISTRY (2018)
Stability criteria for complex microbial communities
Stacey Butler et al.
NATURE COMMUNICATIONS (2018)
Evaluation of Microbial Communities Associated With the Liquid and Solid Phases of the Rumen of Cattle Offered a Diet of Perennial Ryegrass or White Clover
Jenna M. Bowen et al.
FRONTIERS IN MICROBIOLOGY (2018)
Pasture Feeding Changes the Bovine Rumen and Milk Metabolome
Tom F. O'Callaghan et al.
METABOLITES (2018)
Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
Paul Carini et al.
NATURE MICROBIOLOGY (2017)
Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers
Markus V. Lindh et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Divergent functional isoforms drive niche specialisation for nutrient acquisition and use in rumen microbiome
Francesco Rubino et al.
ISME JOURNAL (2017)
Fermentation of model hemicelluloses by Prevotella strains and Butyrivibrio fibrisolvens in pure culture and in ruminal enrichment cultures
Elianna L. Emerson et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)
Impacts of inorganic and organic fertilization treatments on bacterial and fungal communities in a paddy soil
Jichen Wang et al.
APPLIED SOIL ECOLOGY (2017)
Long-term effects of imbalanced fertilization on the composition and diversity of soil bacterial community
Jinu Eo et al.
AGRICULTURE ECOSYSTEMS & ENVIRONMENT (2016)
The Plant Microbiota: Systems-Level Insights and Perspectives
Daniel B. Muller et al.
ANNUAL REVIEW OF GENETICS, VOL 50 (2016)
Nitrogen fertilizer rate affects root exudation, the rhizosphere microbiome and nitrogen-use-efficiency of maize
Shusheng Zhu et al.
APPLIED SOIL ECOLOGY (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China
Jing Zhou et al.
SOIL BIOLOGY & BIOCHEMISTRY (2016)
Soil-Borne Microbiome: Linking Diversity to Function
Lucas W. Mendes et al.
MICROBIAL ECOLOGY (2015)
The importance of the microbiome of the plant holobiont
Philippe Vandenkoornhuyse et al.
NEW PHYTOLOGIST (2015)
The ecology of the microbiome: Networks, competition, and stability
Katharine Z. Coyte et al.
SCIENCE (2015)
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
Gemma Henderson et al.
SCIENTIFIC REPORTS (2015)
Bioaugmentation of Mesorhizobium cicer, Pseudomonas spp. and Piriformospora indica for Sustainable Chickpea Production
Pallavi Mansotra et al.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2015)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Spatial and Temporal Biogeography of Soil Microbial Communities in Arid and Semiarid Regions
Zohar Pasternak et al.
PLOS ONE (2013)
Effects of nitrogen application rate and a nitrification inhibitor dicyandiamide on ammonia oxidizers and N2O emissions in a grazed pasture soil
Yu Dai et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2013)
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
Rodrigo Mendes et al.
FEMS MICROBIOLOGY REVIEWS (2013)
Abiotic Factors Shape Microbial Diversity in Sonoran Desert Soils
David R. Andrew et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Manipulating the soil microbiome to increase soil health and plant fertility
Jacqueline M. Chaparro et al.
BIOLOGY AND FERTILITY OF SOILS (2012)
Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes
Kelly S. Ramirez et al.
GLOBAL CHANGE BIOLOGY (2012)
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
Noah Fierer et al.
ISME JOURNAL (2012)
Soil Nitrogen Availability and Plant Genotype Modify the Nutrition Strategies of M. truncatula and the Associated Rhizosphere Microbial Communities
Anouk Zancarini et al.
PLOS ONE (2012)
Microbial Co-occurrence Relationships in the Human Microbiome
Karoline Faust et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database
Antonio Mora et al.
BMC BIOINFORMATICS (2011)
The Split-Apply-Combine Strategy for Data Analysis
Hadley Wickham
JOURNAL OF STATISTICAL SOFTWARE (2011)
Drivers of bacterial β-diversity depend on spatial scale
Jennifer B. H. Martiny et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Gut microbiome-host interactions in health and disease
James M. Kinross et al.
GENOME MEDICINE (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils
H. J. Di et al.
NATURE GEOSCIENCE (2009)
Plant Growth-Promoting Rhizobacteria Allow Reduced Application Rates of Chemical Fertilizers
A. O. Adesemoye et al.
MICROBIAL ECOLOGY (2009)
Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
Harry J. Flint et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Resistance, resilience, and redundancy in microbial communities
Steven D. Allison et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Carbon addition alters vegetation composition on ex-arable fields
Rene Eschen et al.
JOURNAL OF APPLIED ECOLOGY (2007)
Persistence and functional impact of a microbial inoculant on native microbial community structure, nutrient digestion and fermentation characteristics in a rumen model
CJ Ziemer et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2002)
History and taxonomy: their roles in the core-satellite hypothesis
L Mehranvar et al.
OECOLOGIA (2001)
Nitrogen fixation by white clover in pastures grazed by dairy cows: Temporal variation and effects of nitrogen fertilization
SF Ledgard et al.
PLANT AND SOIL (2001)
Long-distance spore dispersal in wood-inhabiting Basidiomycetes
N Hallenberg et al.
NORDIC JOURNAL OF BOTANY (2001)