相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。RNA contributions to the form and function of biomolecular condensates
Christine Roden et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2021)
In vivo reconstitution finds multivalent RNA-RNA interactions as drivers of meshlike condensates
Weirui Ma et al.
ELIFE (2021)
Conserved long-range base pairings are associated with pre-mRNA processing of human genes
Svetlana Kalmykova et al.
NATURE COMMUNICATIONS (2021)
Nascent RNA scaffolds contribute to chromosome territory architecture and counter chromatin compaction
Kevin Michael Creamer et al.
MOLECULAR CELL (2021)
Shape of promoter antisense RNAs regulates ligand-induced transcription activation
Fan Yang et al.
NATURE (2021)
Global profiling of RNA-binding protein target sites by LACE-seq
Ruibao Su et al.
NATURE CELL BIOLOGY (2021)
Nuclear compartmentalization as a mechanism of quantitative control of gene expression
Prashant Bhat et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2021)
lncRNA SLERT controls phase separation of FC/DFCs to facilitate Pol I transcription
Man Wu et al.
SCIENCE (2021)
The architecture of the SARS-CoV-2 RNA genome inside virion
Changchang Cao et al.
NATURE COMMUNICATIONS (2021)
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
Esther Rheinbay et al.
NATURE (2020)
FXR1 splicing is important for muscle development and biomolecular condensates in muscle cells
Jean A. Smith et al.
JOURNAL OF CELL BIOLOGY (2020)
RIC-seq for global in situ profiling of RNA-RNA spatial interactions
Zhaokui Cai et al.
NATURE (2020)
irCLASH reveals RNA substrates recognized by human ADARs
Yulong Song et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2020)
Isolation and analysis of rereplicated DNA by Rerep-Seq
Johannes Menzel et al.
NUCLEIC ACIDS RESEARCH (2020)
Structural and functional conservation of the programmed-1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2)
Jamie A. Kelly et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2020)
Enhancer RNA: biogenesis, function, and regulation
Rong Ye et al.
SPOTLIGHT ON CHINA: RNA (2020)
Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity
Chu-Xiao Liu et al.
CELL (2019)
Long-range enhancer-promoter contacts in gene expression control
Stefan Schoenfelder et al.
NATURE REVIEWS GENETICS (2019)
Chromatin-associated RNAs as facilitators of functional genomic interactions
Xiao Li et al.
NATURE REVIEWS GENETICS (2019)
The biogenesis, biology and characterization of circular RNAs
Lasse S. Kristensen et al.
NATURE REVIEWS GENETICS (2019)
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
Sofia A. Quinodoz et al.
CELL (2018)
A brave new world of RNA-binding proteins
Matthias W. Hentze et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)
RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome
Briana Van Treeck et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
mRNA structure determines specificity of a polyQ-driven phase separation
Erin M. Langdon et al.
SCIENCE (2018)
Riboswitches and Translation Control
Ronald R. Breaker
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2018)
Emerging Roles for Intermolecular RNA-RNA Interactions in RNP Assemblies
Briana Van Treeck et al.
CELL (2018)
The RNA-binding protein ROD1/PTBP3 cotranscriptionally defines AID-loading sites to mediate antibody class switch in mammalian genomes
Juan Chen et al.
CELL RESEARCH (2018)
COMRADES determines in vivo RNA structures and interactions
Omer Ziv et al.
NATURE METHODS (2018)
Integrative Analysis of Zika Virus Genome RNA Structure Reveals Critical Determinants of Viral Infectivity
Pan Li et al.
CELL HOST & MICROBE (2018)
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome
Tugce Aktas et al.
NATURE (2017)
GRID-seq reveals the global RNA-chromatin interactome
Xiao Li et al.
NATURE BIOTECHNOLOGY (2017)
Unusual semi-extractability as a hallmark of nuclear body-associated architectural noncoding RNAs
Takeshi Chujo et al.
EMBO JOURNAL (2017)
A Phase Separation Model for Transcriptional Control
Denes Hnisz et al.
CELL (2017)
RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure
Zhipeng Lu et al.
CELL (2016)
RNA-Based Coacervates as a Model for Membraneless Organelles: Formation, Properties, and Interfacial Liposome Assembly
William M. Aumiller et al.
LANGMUIR (2016)
In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation
Jong Ghut Ashley Aw et al.
MOLECULAR CELL (2016)
Global Mapping of Human RNA-RNA Interactions
Eesha Sharma et al.
MOLECULAR CELL (2016)
Emerging roles of non-coding RNAs in epigenetic regulation
Juan Chen et al.
SCIENCE CHINA-LIFE SCIENCES (2016)
Mapping RNA-RNA interactome and RNA structure in vivo by MARIO
Tri C. Nguyen et al.
NATURE COMMUNICATIONS (2016)
Viral RNA switch mediates the dynamic control of flavivirus replicase recruitment by genome cyclization
Zhong-Yu Liu et al.
ELIFE (2016)
hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1
Yoichiro Sugimoto et al.
NATURE (2015)
High-throughput determination of RNA structure by proximity ligation
Vijay Ramani et al.
NATURE BIOTECHNOLOGY (2015)
RNA-mediated epigenetic regulation of gene expression
Daniel Holoch et al.
NATURE REVIEWS GENETICS (2015)
Exon-intron circular RNAs regulate transcription in the nucleus
Zhaoyong Li et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET
John W. Hardin et al.
NUCLEIC ACIDS RESEARCH (2015)
Transcription factor trapping by RNA in gene regulatory elements
Alla A. Sigova et al.
SCIENCE (2015)
RNA-RNA interactions in gene regulation: the coding and noncoding players
Sonia Guil et al.
TRENDS IN BIOCHEMICAL SCIENCES (2015)
The structure and functions of coronavirus genomic 3′ and 5′ ends
Dong Yang et al.
VIRUS RESEARCH (2015)
Exon-intron circular RNAs regulate transcription in the nucleus
Zhaoyong Li et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals
Andranik Ivanov et al.
CELL REPORTS (2015)
RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites
Jesse M. Engreitz et al.
CELL (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Complementary Sequence-Mediated Exon Circularization
Xiao-Ou Zhang et al.
CELL (2014)
Short intronic repeat sequences facilitate circular RNA production
Dongming Liang et al.
GENES & DEVELOPMENT (2014)
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
Yiliang Ding et al.
NATURE (2014)
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
Silvi Rouskin et al.
NATURE (2014)
An atlas of active enhancers across human cell types and tissues
Robin Andersson et al.
NATURE (2014)
Landscape and variation of RNA secondary structure across the human transcriptome
Yue Wan et al.
NATURE (2014)
The new frontier of genome engineering with CRISPR-Cas9
Jennifer A. Doudna et al.
SCIENCE (2014)
Direct Conversion of Fibroblasts to Neurons by Reprogramming PTB-Regulated MicroRNA Circuits
Yuanchao Xue et al.
CELL (2013)
Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
Aleksandra Helwak et al.
CELL (2013)
Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step
Kiranmai Gumireddy et al.
EMBO JOURNAL (2013)
The Imprinted H19 LncRNA Antagonizes Let-7 MicroRNAs
Amanda N. Kallen et al.
MOLECULAR CELL (2013)
Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
Wenbo Li et al.
NATURE (2013)
Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription
Michael T. Y. Lam et al.
NATURE (2013)
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
Fan Lai et al.
NATURE (2013)
Natural RNA circles function as efficient microRNA sponges
Thomas B. Hansen et al.
NATURE (2013)
Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
Michael T. Lovci et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Promoter RNA links transcriptional regulation of inflammatory pathway genes
Masayuki Matsui et al.
NUCLEIC ACIDS RESEARCH (2013)
RNA-Guided Human Genome Engineering via Cas9
Prashant Mali et al.
SCIENCE (2013)
Multiplex Genome Engineering Using CRISPR/Cas Systems
Le Cong et al.
SCIENCE (2013)
Alternative 3′-end processing of long noncoding RNA initiates construction of nuclear paraspeckles
Takao Naganuma et al.
EMBO JOURNAL (2012)
Naturally occurring endo-siRNA silences LINE-1 retrotransposons in human cells through DNA methylation
Long Chen et al.
EPIGENETICS (2012)
Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types
Julia Salzman et al.
PLOS ONE (2012)
Malat1 is not an essential component of nuclear speckles in mice
Shinichi Nakagawa et al.
RNA (2012)
The lncRNA Malat1 Is Dispensable for Mouse Development but Its Transcription Plays a cis-Regulatory Role in the Adult
Bin Zhang et al.
CELL REPORTS (2012)
Degradation of Cellular miR-27 by a Novel, Highly Abundant Viral Transcript Is Important for Efficient Virus Replication In Vivo
Lisa Marcinowski et al.
PLOS PATHOGENS (2012)
The Molecular Interactions That Stabilize RNA Tertiary Structure: RNA Motifs, Patterns, and Networks
Samuel E. Butcher et al.
ACCOUNTS OF CHEMICAL RESEARCH (2011)
Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice
Shinichi Nakagawa et al.
JOURNAL OF CELL BIOLOGY (2011)
Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs
Yuntao S. Mao et al.
NATURE CELL BIOLOGY (2011)
Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
Grzegorz Kudla et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Long Noncoding RNAs with Enhancer-like Function in Human Cells
Ulf Andersson Orom et al.
CELL (2010)
The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation
Vidisha Tripathi et al.
MOLECULAR CELL (2010)
Widespread transcription at neuronal activity-regulated enhancers
Tae-Kyung Kim et al.
NATURE (2010)
Genome-wide measurement of RNA secondary structure in yeast
Michael Kertesz et al.
NATURE (2010)
RNA looping by PTB: Evidence using FRET and NMR spectroscopy for a role in splicing repression
Rajan Lamichhane et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Down-Regulation of a Host MicroRNA by a Herpesvirus saimiri Noncoding RNA
Demian Cazalla et al.
SCIENCE (2010)
A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers
Francesca De Santa et al.
PLOS BIOLOGY (2010)
An Architectural Role for a Nuclear Noncoding RNA: NEAT1 RNA Is Essential for the Structure of Paraspeckles
Christine M. Clemson et al.
MOLECULAR CELL (2009)
Altered Nuclear Retention of mRNAs Containing Inverted Repeats in Human Embryonic Stem Cells: Functional Role of a Nuclear Noncoding RNA
Ling-Ling Chen et al.
MOLECULAR CELL (2009)
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
Sung Wook Chi et al.
NATURE (2009)
Biogenesis of small RNAs in animals
V. Narry Kim et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)
Control of alternative splicing through siRNA-mediated transcriptional gene silencing
Mariano Allo et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
Lucia A. Hindorff et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation
Clifford P. Brangwynne et al.
SCIENCE (2009)
MicroRNA-373 induces expression of genes with complementary promoter sequences
Robert F. Place et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Divergent Transcription from Active Promoters
Amy C. Seila et al.
SCIENCE (2008)
The Antisense Transcriptomes of Human Cells
Yiping He et al.
SCIENCE (2008)
RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters
Pascal Preker et al.
SCIENCE (2008)
Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
Leighton J. Core et al.
SCIENCE (2008)
S-adenosylmethionine directly inhibits binding of 30S ribosornal subunits to the SMK box translational riboswitch RNA
Ryan T. Fuchs et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The structure and function of small nucleolar ribonucleoproteins
Steve L. Reichow et al.
NUCLEIC ACIDS RESEARCH (2007)
The polypyrimidine tract binding protein (PTB) represses splicing of exon 6B from the β-tropomyosin pre-mRNA by directly interfering with the binding of the U2AF65 subunit
Jerome Sauliere et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
Small dsRNAs induce transcriptional activation in human cells
Long-Cheng Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing
R Martinez-Contreras et al.
PLOS BIOLOGY (2006)
A yeast RNA-hybrid system for the detection of RNA-RNA interactions in vivo
N Piganeau et al.
RNA (2006)
Structure of PTB bound to RNA: Specific binding and implications for splicing regulation
FC Oberstrass et al.
SCIENCE (2005)
TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing
TP Chendrimada et al.
NATURE (2005)
Understanding alternative splicing: Towards a cellular code
AJ Matlin et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)
Micrornas: Small RNAs with a big role in gene regulation
L He et al.
NATURE REVIEWS GENETICS (2004)
An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes
J Johansson et al.
CELL (2002)
High-affinity hnRNP A1 binding sites and duplex-forming inverted repeats have similar effects on 5′ splice site selection in support of a common looping out and repression mechanism
FUH Nasim et al.
RNA (2002)
The tRNA primer activation signal in the human immunodeficiency virus type 1 genome is important for initiation and processive elongation of reverse transcription
N Beerens et al.
JOURNAL OF VIROLOGY (2002)
Essential regions of the tRNA primer required for HIV-1 infectivity
Q Yu et al.
NUCLEIC ACIDS RESEARCH (2000)
An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells
SM Hammond et al.
NATURE (2000)