相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Perturbation biology links temporal protein changes to drug responses in a melanoma cell line
Elin Nyman et al.
PLOS COMPUTATIONAL BIOLOGY (2020)
PyCoTools: a Python toolbox for COPASI
Ciaran M. Welsh et al.
BIOINFORMATICS (2018)
Control of synaptic plasticity in deep cortical networks
Pieter R. Roelfsema et al.
NATURE REVIEWS NEUROSCIENCE (2018)
FindSim: A Framework for Integrating Neuronal Data and Signaling Models
Nisha A. Viswan et al.
FRONTIERS IN NEUROINFORMATICS (2018)
Subunit exchange enhances information retention by CaMKII in dendritic spines
Dilawar Singh et al.
ELIFE (2018)
Synaptic input sequence discrimination on behavioral timescales mediated by reaction-diffusion chemistry in dendrites
Upinder Singh Bhalla
ELIFE (2017)
Synaptic Neurexin Complexes: A Molecular Code for the Logic of Neural Circuits
Thomas C. Sudhof
CELL (2017)
Methods of Model Reduction for Large-Scale Biological Systems: A Survey of Current Methods and Trends
Thomas J. Snowden et al.
BULLETIN OF MATHEMATICAL BIOLOGY (2017)
The role of nitric oxide in neurovascular coupling
K. Dormanns et al.
JOURNAL OF THEORETICAL BIOLOGY (2016)
Orientation selectivity and the functional clustering of synaptic inputs in primary visual cortex
Daniel E. Wilson et al.
NATURE NEUROSCIENCE (2016)
Design Space Toolbox V2: Automated Software Enabling a Novel Phenotype-Centric Modeling Strategy for Natural and Synthetic Biological Systems
Jason G. Lomnitz et al.
FRONTIERS IN GENETICS (2016)
Reconstruction and Simulation of Neocortical Microcircuitry
Henry Markram et al.
CELL (2015)
Molecular computation in neurons: a modeling perspective
Upinder S. Bhalla
CURRENT OPINION IN NEUROBIOLOGY (2014)
Identifying Optimal Models to Represent Biochemical Systems
Mochamad Apri et al.
PLOS ONE (2014)
Memory Maintenance in Synapses with Calcium-Based Plasticity in the Presence of Background Activity
David Higgins et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Signaling Pathways Involved in Striatal Synaptic Plasticity are Sensitive to Temporal Pattern and Exhibit Spatial Specificity
BoHung Kim et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Linear noise approximation is valid over limited times for any chemical system that is sufficiently large
E. W. J. Wallace et al.
IET SYSTEMS BIOLOGY (2012)
Molecular Constraints on Synaptic Tagging and Maintenance of Long-Term Potentiation: A Predictive Model
Paul Smolen et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Reduction of dynamical biochemical reactions networks in computational biology
O. Radulescu et al.
Frontiers in Genetics (2012)
A simple work flow for biologically inspired model reduction - application to early JAK-STAT signaling
Tom Quaiser et al.
BMC SYSTEMS BIOLOGY (2011)
Towards a quantitative model of the post-synaptic proteome
Oksana Sorokina et al.
MOLECULAR BIOSYSTEMS (2011)
Characterization of the proteome, diseases and evolution of the human postsynaptic density
Alex Bayes et al.
NATURE NEUROSCIENCE (2011)
Drawing an elephant with four complex parameters
Juergen Mayer et al.
AMERICAN JOURNAL OF PHYSICS (2010)
The Role of Type 4 Phosphodiesterases in Generating Microdomains of cAMP: Large Scale Stochastic Simulations
Rodrigo F. Oliveira et al.
PLOS ONE (2010)
Detailed Simulations of Cell Biology with Smoldyn 2.1
Steven S. Andrews et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Signaling Logic of Activity-Triggered Dendritic Protein Synthesis: An mTOR Gate But Not a Feedback Switch
Pragati Jain et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
STEPS: Modeling and simulating complex reaction-diffusion systems with Python
Stefan Wils
Frontiers in Neuroinformatics (2009)
Oscillator model reduction preserving the phase response: Application to the circadian clock
Stephanie R. Taylor et al.
BIOPHYSICAL JOURNAL (2008)
Robust simplifications of multiscale biochemical networks
Ovidiu Radulescu et al.
BMC SYSTEMS BIOLOGY (2008)
Memory Switches in Chemical Reaction Space
Naren Ramakrishnan et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Network motifs: theory and experimental approaches
Uri Alon
NATURE REVIEWS GENETICS (2007)
COPASI- A COmplex PAthway SImulator
Stefan Hoops et al.
BIOINFORMATICS (2006)
Reduction of a biochemical model with preservation of its basic dynamic properties
Sune Dano et al.
FEBS JOURNAL (2006)
Recognition by variance: Learning rules for spatiotemporal patterns
Omri Barak et al.
NEURAL COMPUTATION (2006)
Reduced-order modelling of biochemical networks: application to the GTPase-cycle signalling module
MR Maurya et al.
IEE PROCEEDINGS SYSTEMS BIOLOGY (2005)
SUNDIALS: Suite of nonlinear and differential/algebraic equation solvers
AC Hindmarsh et al.
ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE (2005)
A mechanism for Ca2+/calmodulin-dependent protein kinase II clustering at synaptic and nonsynaptic sites based on self-association
A Hudmon et al.
JOURNAL OF NEUROSCIENCE (2005)
Molecular switches at the synapse emerge from receptor and kinase traffic
A Hayer et al.
PLOS COMPUTATIONAL BIOLOGY (2005)
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
NI Markevich et al.
JOURNAL OF CELL BIOLOGY (2004)
Spike timing-dependent plasticity of neural circuits
Y Dan et al.
NEURON (2004)
A role for ERKII in synaptic pattern selectivity on the time-scale of minutes
SM Ajay et al.
EUROPEAN JOURNAL OF NEUROSCIENCE (2004)
A model for restriction point control of the mammalian cell cycle
M Novák et al.
JOURNAL OF THEORETICAL BIOLOGY (2004)
Understanding complex signaling networks through models and metaphors
US Bhalla
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2003)
A unified model of NMDA receptor-dependent bidirectional synaptic plasticity
HZ Shouval et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
The chemical organization of signaling interactions
US Bhalla
BIOINFORMATICS (2002)
Design principles for elementary gene circuits: Elements, methods, and examples
MA Savageau
CHAOS (2001)
Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades
BN Kholodenko
EUROPEAN JOURNAL OF BIOCHEMISTRY (2000)
分享论文
