相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Mitochondrial genomes of the human pathogens Coccidioides immitis and Coccidioides posadasii
Marcus de Melo Teixeira et al.
G3-GENES GENOMES GENETICS (2021)
Treatment for Early, Uncomplicated Coccidioidomycosis: What Is Success?
John N. Galgiani et al.
CLINICAL INFECTIOUS DISEASES (2020)
Characterizing in vitro spherule morphogenesis of multiple strains of both species of Coccidioides
Heather L. Mead et al.
MEDICAL MYCOLOGY (2019)
Assembly of long, error-prone reads using repeat graphs
Mikhail Kolmogorov et al.
NATURE BIOTECHNOLOGY (2019)
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
Kai Blin et al.
NUCLEIC ACIDS RESEARCH (2019)
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
Stephan Greiner et al.
NUCLEIC ACIDS RESEARCH (2019)
Enrichment of G4DNA and a Large Inverted Repeat Coincide in the Mitochondrial Genomes of Termitomyces
Mathijs Nieuwenhuis et al.
GENOME BIOLOGY AND EVOLUTION (2019)
The Rise of Coccidioides: Forces Against the Dust Devil Unleashed
Marley C. Caballero Van Dyke et al.
FRONTIERS IN IMMUNOLOGY (2019)
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
Ole K. Torresen et al.
NUCLEIC ACIDS RESEARCH (2019)
Population Structure and Genetic Diversity among Isolates of Coccidioides posadasii in Venezuela and Surrounding Regions
Marcus M. Teixeira et al.
MBIO (2019)
Gene exchange between two divergent species of the fungal human pathogen, Coccidioides
Colin S. Maxwell et al.
EVOLUTION (2019)
An Improved Genome Assembly for Drosophila navojoa, the Basal Species in the mojavensis Cluster
Thyago Vanderlinde et al.
JOURNAL OF HEREDITY (2019)
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Michael Alonge et al.
GENOME BIOLOGY (2019)
Heat Inactivation of Coccidioides posadasii and Coccidioides immitis for Use in Lower Biosafety Containment
Heather L. Mead et al.
APPLIED BIOSAFETY (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Front Cover: Proteogenomic Re-Annotation of Coccidioides posadasii Strain Silveira
Natalie M. Mitchell et al.
PROTEOMICS (2018)
Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen
Luliana V. Ene et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Analysis of Transposable Elements in Coccidioides Species
Theo N. Kirkland et al.
JOURNAL OF FUNGI (2018)
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
Aleksey V. Zimin et al.
GENOME RESEARCH (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii
Yuan Chen et al.
MBIO (2017)
Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure
Sunita Sinha et al.
G3-GENES GENOMES GENETICS (2017)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS
Katharina J. Hoff et al.
BIOINFORMATICS (2016)
Divergent and Convergent Evolution of Fungal Pathogenicity
Yanfang Shang et al.
GENOME BIOLOGY AND EVOLUTION (2016)
A Coccidioides posadasii CPS1 Deletion Mutant Is Avirulent and Protects Mice from Lethal Infection
Hema P. Narra et al.
INFECTION AND IMMUNITY (2016)
Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever
David M. Engelthaler et al.
MBIO (2016)
Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
Raul Castanera et al.
PLOS GENETICS (2016)
Use of Population Genetics to Assess the Ecology, Evolution, and Population Structure of Coccidioides
Marcus M. Teixeira et al.
EMERGING INFECTIOUS DISEASES (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
LoRDEC: accurate and efficient long read error correction
Leena Salmela et al.
BIOINFORMATICS (2014)
fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets
Anil Raj et al.
GENETICS (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation
Guilhem Janbon et al.
PLOS GENETICS (2014)
STRUCTURE PLOT: a program for drawing elegant STRUCTURE bar plots in user friendly interface
Ramesh Krishnan Ramasamy et al.
SPRINGERPLUS (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Using Tablet for visual exploration of second-generation sequencing data
Iain Milne et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Recent Advances in Our Understanding of the Environmental, Epidemiological, Immunological, and Clinical Dimensions of Coccidioidomycosis
Chinh Nguyen et al.
CLINICAL MICROBIOLOGY REVIEWS (2013)
Ultrafast Approximation for Phylogenetic Bootstrap
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Comparative Transcriptomics of the Saprobic and Parasitic Growth Phases in Coccidioides pp
Emily Whiston et al.
PLOS ONE (2012)
Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection
Diego A. Martinez et al.
MBIO (2012)
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
Daniel E. Neafsey et al.
GENOME RESEARCH (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
Thomas J. Sharpton et al.
GENOME RESEARCH (2009)
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
Vardges Ter-Hovhannisyan et al.
GENOME RESEARCH (2008)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
Gepard: a rapid and sensitive tool for creating dotplots on genome scale
Jan Krumsiek et al.
BIOINFORMATICS (2007)
Transcriptional regulation of chemical diversity in Aspergillus fumigatus by LaeA
Robyn M. Perrin et al.
PLOS PATHOGENS (2007)
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
Maria Anisimova et al.
SYSTEMATIC BIOLOGY (2006)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
Coccidioidomycosis: Host response and vaccine development
RA Cox et al.
CLINICAL MICROBIOLOGY REVIEWS (2004)
Protection of mice against Coccidioides immitis intranasal infection by vaccination with recombinant antigen 2/PRA
L Shubitz et al.
INFECTION AND IMMUNITY (2002)
Biogeographic range expansion into South America by Coccidioides immitis mirrors New World patterns of human migration
MC Fisher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
A major cell surface antigen of Coccidioides immitis which elicits both humoral and cellular immune responses
CY Hung et al.
INFECTION AND IMMUNITY (2000)
分享论文
