4.8 Article

Complete atomic structure of a native archaeal cell surface

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

UCSF ChimeraX: Structure visualization for researchers, educators, and developers

Eric F. Pettersen et al.

Summary: UCSF ChimeraX is a powerful visualization program with enhanced performance and graphics, offering new tools and analysis features, support for various areas like virtual reality, and improved ease of use, along with an app store for researchers to contribute new tools.

PROTEIN SCIENCE (2021)

Article Multidisciplinary Sciences

Design of biologically active binary protein 2D materials

Ariel J. Ben-Sasson et al.

Summary: By designing rigid interfaces, we have successfully generated binary layers co-assembled by two protein components, and experiments have shown that this material can rapidly form ordered structures in vitro and in cells. This design approach allows for customization and symmetry reconfiguration, enabling the formation of ligand arrays that can drive receptor clustering, downstream protein recruitment, and signaling.

NATURE (2021)

Article Microbiology

Analysis of Cell-Cell Bridges in Haloferax volcanii Using Electron Cryo-Tomography Reveal a Continuous Cytoplasm and S-Layer

Shamphavi Sivabalasarma et al.

Summary: Through electron cryo-tomography and fluorescence microscopy, it has been observed that halophilic archaea form cell-cell bridges during mating, which can facilitate exchange of cellular components.

FRONTIERS IN MICROBIOLOGY (2021)

Review Biochemistry & Molecular Biology

Molecular Logic of Prokaryotic Surface Layer Structures

Tanmay A. M. Bharat et al.

Summary: The majority of prokaryotic cells are surrounded by a surface layer (S-layer) made of repeating lattice-forming proteins, which play various roles in cellular defense, cell-shape maintenance, and material import/export regulation. Recent advancements in structural and cell biology techniques have improved our understanding of S-layer structure and assembly, uncovering shared assembly principles and a potential molecular framework for understanding the structural organization of S-layer proteins in bacteria and archaea.

TRENDS IN MICROBIOLOGY (2021)

Article Biochemistry & Molecular Biology

In Situ Structure of an Intact Lipopolysaccharide-Bound Bacterial Surface Layer

Andriko von Kugelgen et al.

Article Multidisciplinary Sciences

Isolation of an archaeon at the prokaryote-eukaryote interface

Hiroyuki Imachi et al.

NATURE (2020)

Article Multidisciplinary Sciences

Improved protein structure prediction using predicted interresidue orientations

Jianyi Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Environmental factors influence the Haloferax volcanii S-layer protein structure

Thiago Rodrigues-Oliveira et al.

PLOS ONE (2019)

Article Microbiology

Structure of S-layer protein Sap reveals a mechanism for therapeutic intervention in anthrax

Antonella Fioravanti et al.

NATURE MICROBIOLOGY (2019)

Article Biochemical Research Methods

HH-suite3 for fast remote homology detection and deep protein annotation

Martin Steinegger et al.

BMC BIOINFORMATICS (2019)

Article Biochemical Research Methods

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

Dorothee Liebschner et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2019)

Article Biochemical Research Methods

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

Tristan Bepler et al.

NATURE METHODS (2019)

Article Multidisciplinary Sciences

Architecture and modular assembly of Sulfolobus S-layers revealed by electron cryotomography

Lavinia Gambelli et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Multidisciplinary Sciences

CRISPR-mediated gene silencing reveals involvement of the archaeal S-layer in cell division and virus infection

Isabelle Anna Zink et al.

NATURE COMMUNICATIONS (2019)

Article Biochemical Research Methods

Engineering the S-Layer of Caulobacter crescentus as a Foundation for Stable, High-Density, 2D Living Materials

Marimikel Charrier et al.

ACS SYNTHETIC BIOLOGY (2019)

Article Biochemistry & Molecular Biology

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

Lukas Zimmermann et al.

JOURNAL OF MOLECULAR BIOLOGY (2018)

Article Multidisciplinary Sciences

Structure and architecture of immature and mature murine leukemia virus capsids

Kun Qu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Biotechnology & Applied Microbiology

N-Glycosylation Is Important for Proper Haloferax volcanii S-Layer Stability and Function

Adi Tamir et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)

Article Biochemistry & Molecular Biology

Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4 Å

Beata Turonova et al.

JOURNAL OF STRUCTURAL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging

Wim J. H. Hagen et al.

JOURNAL OF STRUCTURAL BIOLOGY (2017)

Article Multidisciplinary Sciences

Structure and assembly of the Ebola virus nucleocapsid

William Wan et al.

NATURE (2017)

Letter Biochemical Research Methods

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

Shawn Q. Zheng et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Addressing preferred specimen orientation in single-particle cryo-EM through tilting

Yong Zi Tan et al.

NATURE METHODS (2017)

Article Microbiology

Cell Surface Glycosylation Is Required for Efficient Mating of Haloferax volcanii

Yarden Shalev et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Biochemical Research Methods

Recent developments in the CCP-EM software suite

Tom Burnley et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2017)

Article Microbiology

Structure of the hexagonal surface layer on Caulobacter crescentus cells

Tanmay A. M. Bharat et al.

NATURE MICROBIOLOGY (2017)

Article Biochemical Research Methods

Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION

Tanmay A. M. Bharat et al.

NATURE PROTOCOLS (2016)

Article Multidisciplinary Sciences

Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers

Melina Kerou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

The structure and flexibility of conical HIV-1 capsids determined within intact virions

Simone Mattei et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Preservation of Archaeal Surface Layer Structure During Mineralization

Adrienne Kish et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

Alexis Rohou et al.

JOURNAL OF STRUCTURAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Advances in Single-Particle Electron Cryomicroscopy Structure Determination applied to Sub-tomogram Averaging

Tanmay A. M. Bharat et al.

STRUCTURE (2015)

Article Multidisciplinary Sciences

CetZ tubulin-like proteins control archaeal cell shape

Iain G. Duggin et al.

NATURE (2015)

Article Biology

An inside-out origin for the eukaryotic cell

David A. Baum et al.

BMC BIOLOGY (2014)

Article Biochemistry & Molecular Biology

A Rhomboid Protease Gene Deletion Affects a Novel Oligosaccharide N-Linked to the S-layer Glycoprotein of Haloferax volcanii

Juliana Parente et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2014)

Article Biochemistry & Molecular Biology

Single particle 3D reconstruction for 2D crystal images of membrane proteins

Sebastian Scherer et al.

JOURNAL OF STRUCTURAL BIOLOGY (2014)

Review Microbiology

Biogenesis and functions of bacterial S-layers

Robert P. Fagan et al.

NATURE REVIEWS MICROBIOLOGY (2014)

Review Microbiology

Archaeal S-layer glycoproteins: post-translational modification in the face of extremes

Lina Kandiba et al.

FRONTIERS IN MICROBIOLOGY (2014)

Review Biochemistry & Molecular Biology

S-Layer Protein Self-Assembly

Dietmar Pum et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2013)

Article Biochemistry & Molecular Biology

Haloferax volcanii archaeosortase is required for motility, mating, and C-terminal processing of the S-layer glycoprotein

Mohd Farid Abdul Halim et al.

MOLECULAR MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

Sjors H. W. Scheres

JOURNAL OF STRUCTURAL BIOLOGY (2012)

Article Multidisciplinary Sciences

SbsB structure and lattice reconstruction unveil Ca2+ triggered S-layer assembly

Ekaterina Baranova et al.

NATURE (2012)

Article Biochemical Research Methods

Fiji: an open-source platform for biological-image analysis

Johannes Schindelin et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Structure of the surface layer of the methanogenic archaean Methanosarcina acetivorans

Mark A. Arbing et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

REFMAC5 for the refinement of macromolecular crystal structures

Garib N. Murshudov et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2011)

Review Microbiology

The archaeal cell envelope

Sonja-Verena Albers et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Article Biochemistry & Molecular Biology

Cryo-Electron Tomography of Marburg Virus Particles and Their Morphogenesis within Infected Cells

Tanmay A. M. Bharat et al.

PLOS BIOLOGY (2011)

Article Biochemical Research Methods

Features and development of Coot

P. Emsley et al.

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)

Article Biochemistry & Molecular Biology

The interaction of Nanoarchaeum equitans with Ignicoccus hospitalis: proteins in the contact site between two cells

Tillmann Burghardt et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2009)

Article Biochemistry & Molecular Biology

Structure of full-length HIV-1CA: a model for the mature capsid lattice

Barbie K. Ganser-Pornillos et al.

Article Biochemistry & Molecular Biology

Automated electron microscope tomography using robust prediction of specimen movements

DN Mastronarde

JOURNAL OF STRUCTURAL BIOLOGY (2005)

Article Multidisciplinary Sciences

Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography

F Förster et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biotechnology & Applied Microbiology

Development of additional selectable markers for the halophilic Archaeon Haloferax volcanii based on the leuB and trpA genes

T Allers et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Article Multidisciplinary Sciences

Aquaporin-0 membrane junctions reveal the structure of a closed water pore

T Gonen et al.

NATURE (2004)

Article Chemistry, Multidisciplinary

UCSF chimera - A visualization system for exploratory research and analysis

EF Pettersen et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Review Microbiology

S-layer proteins

M Sára et al.

JOURNAL OF BACTERIOLOGY (2000)