相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing
Ki Wook Kim et al.
SCIENTIFIC REPORTS (2021)
A domestic cat whole exome sequencing resource for trait discovery
Alana R. Rodney et al.
SCIENTIFIC REPORTS (2021)
The Plant DNA C-values database (release 7.1): an updated online repository of plant genome size data for comparative studies
Jaume Pellicer et al.
NEW PHYTOLOGIST (2020)
The complete chloroplast genome of Aloe vera from China as a Chinese herb
Jia-Ju Ren et al.
MITOCHONDRIAL DNA PART B-RESOURCES (2020)
Tackling Rapid Radiations With Targeted Sequencing
Isabel Larridon et al.
FRONTIERS IN PLANT SCIENCE (2020)
Strategies for reducing per-sample costs in target capture sequencing for phylogenomics and population genomics in plants
Haley Hale et al.
APPLICATIONS IN PLANT SCIENCES (2020)
Editorial: Phylogenomic Approaches to Deal With Particularly Challenging Plant Lineages
Marcial Escudero et al.
FRONTIERS IN PLANT SCIENCE (2020)
Repeat-sequence turnover shifts fundamentally in species with large genomes
Petr Novak et al.
NATURE PLANTS (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms
Marylaure de La Harpe et al.
MOLECULAR ECOLOGY RESOURCES (2019)
Rates of niche and phenotype evolution lag behind diversification in a temperate radiation
Ryan A. Folk et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Diversification of Hawaiian Cyrtandra (Gesneriaceae) under the influence of incomplete lineage sorting and hybridization
Joseph A. Kleinkopf et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2019)
Multiple historical processes obscure phylogenetic relationships in a taxonomically difficult group (Lobariaceae, Ascomycota)
Todd J. Widhelm et al.
SCIENTIFIC REPORTS (2019)
A customized nuclear target enrichment approach for developing a phylogenomic baseline for Dioscorea yams (Dioscoreaceae)
Marybel Soto Gomez et al.
APPLICATIONS IN PLANT SCIENCES (2019)
Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms
Grace E. Brewer et al.
FRONTIERS IN PLANT SCIENCE (2019)
Hyb-Seq for Flowering Plant Systematics
Steven Dodsworth et al.
TRENDS IN PLANT SCIENCE (2019)
Museomics Clarifies the Classification of Aloidendron (Asphodelaceae), the Iconic African Tree Aloes
Panagiota Malakasi et al.
FRONTIERS IN PLANT SCIENCE (2019)
The Limits of Hyb-Seq for Herbarium Specimens: Impact of Preservation Techniques
Laura L. Forrest et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2019)
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
Matthew G. Johnson et al.
SYSTEMATIC BIOLOGY (2019)
Target Capture Sequencing Unravels Rubus Evolution
Katherine A. Carter et al.
FRONTIERS IN PLANT SCIENCE (2019)
Origin of angiosperms and the puzzle of the Jurassic gap
Hong-Tao Li et al.
NATURE PLANTS (2019)
Impact of whole-genome duplication events on diversification rates in angiosperms
Jacob B. Landis et al.
AMERICAN JOURNAL OF BOTANY (2018)
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
Chao Zhang et al.
BMC BIOINFORMATICS (2018)
A phylogenetic analysis of the genus Aloe (Asphodelaceae) in Madagascar and the Mascarene Islands
Richard Dee et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2018)
Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above
Tamara Villaverde et al.
NEW PHYTOLOGIST (2018)
Genome Size Diversity and Its Impact on the Evolution of Land Plants
Jaume Pellicer et al.
GENES (2018)
Multilocus DNA barcoding - Species Identification with Multilocus Data
Junning Liu et al.
SCIENTIFIC REPORTS (2017)
Targeted capture to assess neutral genomic variation in the narrow-leaf hopbush across a continental biodiversity refugium
Matthew J. Christmas et al.
SCIENTIFIC REPORTS (2017)
MultiQC: summarize analysis results for multiple tools and samples in a single report
Philip Ewels et al.
BIOINFORMATICS (2016)
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
James W. Byng et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2016)
Retrieval of hundreds of nuclear loci from herbarium specimens
Michelle L. Hart et al.
TAXON (2016)
The minimal amount of starting DNA for Agilent's hybrid capture-based targeted massively parallel sequencing
Jongsuk Chung et al.
SCIENTIFIC REPORTS (2016)
HYBPIPER: EXTRACTING CODING SEQUENCE AND INTRONS FOR PHYLOGENETICS FROM HIGH-THROUGHP UT SEQUENCING READS USING TARGET ENRICHMENT
Matthew G. Johnson et al.
APPLICATIONS IN PLANT SCIENCES (2016)
Evolutionary history and leaf succulence as explanations for medicinal use in aloes and the global popularity of Aloe vera
Olwen M. Grace et al.
BMC EVOLUTIONARY BIOLOGY (2015)
MARKERMINER 1.0: A NEW APPLICATION FOR PHYLOGENETIC MARKER DEVELOPMENT USING ANGIOSPERM TRANSCRIPTOMES
Srikar Chamala et al.
APPLICATIONS IN PLANT SCIENCES (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
A Molecular Phylogeny and Generic Classification of Asphodelaceae subfamily Alooideae: A Final Resolution of the Prickly Issue of Polyphyly in the Alooids?
John Manning et al.
SYSTEMATIC BOTANY (2014)
HYB-SEQ: COMBINING TARGET ENRICHMENT AND GENOME SKIMMING FOR PLANT PHYLOGENOMICS
Kevin Weitemier et al.
APPLICATIONS IN PLANT SCIENCES (2014)
Potential use of low-copy nuclear genes in DNA barcoding: a comparison with plastid genes in two Hawaiian plant radiations
Yohan Pillon et al.
BMC EVOLUTIONARY BIOLOGY (2013)
Using Tablet for visual exploration of second-generation sequencing data
Iain Milne et al.
BRIEFINGS IN BIOINFORMATICS (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens
Martijn Staats et al.
PLOS ONE (2013)
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
Riet De Smet et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
A revised generic classification for Aloe (Xanthorrhoeaceae subfam. Asphodeloideae)
Olwen M. Grace et al.
PHYTOTAXA (2013)
TARGETED SEQUENCE CAPTURE AS A POWERFUL TOOL FOR EVOLUTIONARY ANALYSIS
Corrinne E. Grover et al.
AMERICAN JOURNAL OF BOTANY (2012)
phytools: an R package for phylogenetic comparative biology (and other things)
Liam J. Revell
METHODS IN ECOLOGY AND EVOLUTION (2012)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
DNA Damage in Plant Herbarium Tissue
Martijn Staats et al.
PLOS ONE (2011)
Current perspectives on the economic botany of the genus Aloe L. (Xanthorrhoeaceae)
O. M. Grace
SOUTH AFRICAN JOURNAL OF BOTANY (2011)
The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell
Thomas Junier et al.
BIOINFORMATICS (2010)
FASconCAT: Convenient handling of data matrices
Patrick Kueck et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Documented Utility and Biocultural Value of Aloe L. (Asphodelaceae): A Review
Olwen M. Grace et al.
ECONOMIC BOTANY (2009)
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
Andreas Gnirke et al.
NATURE BIOTECHNOLOGY (2009)
A DNA barcode for land plants
Peter M. Hollingsworth et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
Birgitta Bremer et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2009)
The TIGR Rice Genome Annotation Resource: Improvements and new features
Shu Ouyang et al.
NUCLEIC ACIDS RESEARCH (2007)
Inferring phylogeny despite incomplete lineage sorting
WP Maddison et al.
SYSTEMATIC BIOLOGY (2006)
Application of phylogenetic networks in evolutionary studies
DH Huson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
How much data are needed to resolve a difficult phylogeny? Case study in Lamiales
AH Wortley et al.
SYSTEMATIC BIOLOGY (2005)
Biological identifications through DNA barcodes
PDN Hebert et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)