相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
Francesco Asnicar et al.
NATURE MEDICINE (2021)
Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients
Erez N. Baruch et al.
SCIENCE (2021)
Fecal microbiota transplant overcomes resistance to anti-PD-1 therapy in melanoma patients
Diwakar Davar et al.
SCIENCE (2021)
High-Fiber, Whole-Food Dietary Intervention Alters the Human Gut Microbiome but Not Fecal Short-Chain Fatty Acids
Andrew Oliver et al.
MSYSTEMS (2021)
Gut microbiota signatures are associated with toxicity to combined CTLA-4 and PD-1 blockade
Miles C. Andrews et al.
NATURE MEDICINE (2021)
Gut microbiome variation modulates the effects of dietary fiber on host metabolism
Sofia M. Murga-Garrido et al.
MICROBIOME (2021)
Multimodel preclinical platform predicts clinical response of melanoma to immunotherapy
Eva Perez-Guijarro et al.
NATURE MEDICINE (2020)
Association of Probiotic Clostridium butyricum Therapy with Survival and Response to Immune Checkpoint Blockade in Patients with Lung Cancer
Yusuke Tomita et al.
CANCER IMMUNOLOGY RESEARCH (2020)
Performance comparison of fecal preservative and stock solutions for gut microbiome storage at room temperature
Chanhyeok Park et al.
JOURNAL OF MICROBIOLOGY (2020)
Association between body mass index and survival outcomes for cancer patients treated with immune checkpoint inhibitors: a systematic review and meta-analysis
Yue An et al.
JOURNAL OF TRANSLATIONAL MEDICINE (2020)
The Gut Microbiome and Individual-Specific Responses to Diet
Avner Leshem et al.
MSYSTEMS (2020)
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut
Leszek Michalak et al.
NATURE COMMUNICATIONS (2020)
A defined commensal consortium elicits CD8 T cells and anti-cancer immunity
Takeshi Tanoue et al.
NATURE (2019)
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
Yingyao Zhou et al.
NATURE COMMUNICATIONS (2019)
Association of Prior Antibiotic Treatment With Survival and Response to Immune Checkpoint Inhibitor Therapy in Patients With Cancer
David J. Pinato et al.
JAMA ONCOLOGY (2019)
Relating the gut metagenome and metatranscriptome to immunotherapy responses in melanoma patients
Brandilyn A. Peters et al.
GENOME MEDICINE (2019)
Microbiota and cancer immunotherapy: in search of microbial signals
Raad Z. Gharaibeh et al.
GUT (2019)
Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients
V. Gopalakrishnan et al.
SCIENCE (2018)
Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors
Bertrand Routy et al.
SCIENCE (2018)
Dietary fiber intervention on gut microbiota composition in healthy adults: a systematic review and meta-analysis
Daniel So et al.
AMERICAN JOURNAL OF CLINICAL NUTRITION (2018)
The Impact of Dietary Fiber on Gut Microbiota in Host Health and Disease
Kassem Makki et al.
CELL HOST & MICROBE (2018)
Association of body-mass index and outcomes in patients with metastatic melanoma treated with targeted therapy, immunotherapy, or chemotherapy: a retrospective, multicohort analysis
Jennifer L. McQuade et al.
LANCET ONCOLOGY (2018)
The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients
Vyara Matson et al.
SCIENCE (2018)
Cancer immunotherapy using checkpoint blockade
Antoni Ribas et al.
SCIENCE (2018)
Understanding the prebiotic potential of different dietary fibers using an in vitro continuous adult fermentation model (PolyFermS)
Sophie A. Poeker et al.
SCIENTIFIC REPORTS (2018)
American Gut: an Open Platform for Citizen Science Microbiome Research
Daniel McDonald et al.
MSYSTEMS (2018)
KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples
Jeremiah J. Minich et al.
MSYSTEMS (2018)
Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome
David M. Klurfeld et al.
AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM (2018)
Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT
Jotham Suez et al.
CELL (2018)
Extensive impact of non-antibiotic drugs on human gut bacteria
Lisa Maier et al.
NATURE (2018)
Environment dominates over host genetics in shaping human gut microbiota
Daphna Rothschild et al.
NATURE (2018)
Comparison of Fecal Collection Methods for Microbiome and Metabolomics Studies
Zheng Wang et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2018)
Development and Evaluation of the National Cancer Institute's Dietary Screener Questionnaire Scoring Algorithms
Frances E. Thompson et al.
JOURNAL OF NUTRITION (2017)
lmerTest Package: Tests in Linear Mixed Effects Models
Alexandra Kuznetsova et al.
JOURNAL OF STATISTICAL SOFTWARE (2017)
Prophylactic Supplementation of Bifidobacterium longum 51A Protects Mice from Ovariectomy-Induced Exacerbated Allergic Airway Inflammation and Airway Hyperresponsiveness
Eduardo Mendes et al.
FRONTIERS IN MICROBIOLOGY (2017)
Metagenomic Shotgun Sequencing and Unbiased Metabolomic Profiling Identify Specific Human Gut Microbiota and Metabolites Associated with Immune Checkpoint Therapy Efficacy in Melanoma Patients
Arthur E. Frankel et al.
NEOPLASIA (2017)
The distinct effects of orally administered Lactobacillus rhamnosus GG and Lactococcus lactis subsp lactis C59 on gene expression in the murine small intestine
Chise Suzuki et al.
PLOS ONE (2017)
Unexpected links reflect the noise in networks
Anatoly Yambartsev et al.
BIOLOGY DIRECT (2016)
Novel algorithmic approach predicts tumor mutation load and correlates with immunotherapy clinical outcomes using a defined gene mutation set
Jason Roszik et al.
BMC MEDICINE (2016)
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
Mahesh S. Desai et al.
CELL (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
Se Jin Song et al.
MSYSTEMS (2016)
Testing in Microbiome-Profiling Studies with MiRKAT, the Microbiome Regression-Based Kernel Association Test
Ni Zhao et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2015)
An isotope-labeled chemical derivatization method for the quantitation of short-chain fatty acids in human feces by liquid chromatography-tandem mass spectrometry
Jun Han et al.
ANALYTICA CHIMICA ACTA (2015)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Fitting Linear Mixed-Effects Models Using lme4
Douglas Bates et al.
JOURNAL OF STATISTICAL SOFTWARE (2015)
Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy
Ayelet Sivan et al.
SCIENCE (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses
Pier Luigi Buttigieg et al.
FEMS MICROBIOLOGY ECOLOGY (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Response to BRAF Inhibition in Melanoma Is Enhanced When Combined with Immune Checkpoint Blockade
Zachary A. Cooper et al.
CANCER IMMUNOLOGY RESEARCH (2014)
The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism
Gijs den Besten et al.
JOURNAL OF LIPID RESEARCH (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
VSL#3 probiotic modifies mucosal microbial composition but does not reduce colitis-associated colorectal cancer
Janelle C. Arthur et al.
SCIENTIFIC REPORTS (2013)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Microbial degradation of complex carbohydrates in the gut
Harry J. Flint et al.
GUT MICROBES (2012)
UniFrac: an effective distance metric for microbial community comparison
Catherine Lozupone et al.
ISME JOURNAL (2011)
Shifting the balance: antibiotic effects on host-microbiota mutualism
Benjamin P. Willing et al.
NATURE REVIEWS MICROBIOLOGY (2011)
Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
Gary D. Wu et al.
SCIENCE (2011)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
New response evaluation criteria in solid tumours: Revised RECIST guideline (version 1.1)
E. A. Eisenhauer et al.
EUROPEAN JOURNAL OF CANCER (2009)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
An automated method for finding molecular complexes in large protein interaction networks
GD Bader et al.
BMC BIOINFORMATICS (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
分享论文
