相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。A semiparametric model for between-subject attributes: Applications to beta-diversity of microbiome data
J. Liu et al.
BIOMETRICS (2022)
Decade-scale stability and change in a marine bivalve microbiome
Alexander T. Neu et al.
MOLECULAR ECOLOGY (2021)
Effect of Amplicon Sequencing Depth in Environmental Microbiome Research
Meganathan P. Ramakodi
CURRENT MICROBIOLOGY (2021)
Do host-associated microbes show a contrarian latitudinal diversity gradient? Insights from Mytilus californianus, an intertidal foundation host
Alexander T. Neu et al.
JOURNAL OF BIOGEOGRAPHY (2021)
Ultra-accurate microbial amplicon sequencing with synthetic long reads
Benjamin J. Callahan et al.
MICROBIOME (2021)
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
Isabel Abellan-Schneyder et al.
MSPHERE (2021)
Absence of a microbiome in the midgut trunk of six representative Crustacea
Gary G. Martin et al.
JOURNAL OF CRUSTACEAN BIOLOGY (2020)
Applying the core microbiome to understand host-microbe systems
Alice Risely
JOURNAL OF ANIMAL ECOLOGY (2020)
Persistence of a Core Microbiome Through the Ontogeny of a Multi-Host Parasite
Fatima Jorge et al.
FRONTIERS IN MICROBIOLOGY (2020)
Microbiome definition re-visited: old concepts and new challenges
Gabriele Berg et al.
MICROBIOME (2020)
Microbiome dynamics during cast ageing in the earthworm Aporrectodea caliginosa
Manuel Aira et al.
APPLIED SOIL ECOLOGY (2019)
The use of technical replication for detection of low-level somatic mutations in next-generation sequencing
Junho Kim et al.
NATURE COMMUNICATIONS (2019)
A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Cameron Martino et al.
MSYSTEMS (2019)
A guide to the application of Hill numbers to DNA-based diversity analyses
Antton Alberdi et al.
MOLECULAR ECOLOGY RESOURCES (2019)
Climate change microbiology - problems and perspectives
David A. Hutchins et al.
NATURE REVIEWS MICROBIOLOGY (2019)
Initial description of the core ocular surface microbiome in dogs: Bacterial community diversity and composition in a defined canine population
Marina L. Leis et al.
VETERINARY OPHTHALMOLOGY (2019)
Impact of Host DNA and Sequencing Depth on the Taxonomic Resolution of Whole Metagenome Sequencing for Microbiome Analysis
Joana Pereira-Marques et al.
FRONTIERS IN MICROBIOLOGY (2019)
Sponges and Their Microbiomes Show Similar Community Metrics Across Impacted and Well-Preserved Reefs
Marta Turon et al.
FRONTIERS IN MICROBIOLOGY (2019)
A shared core microbiome in soda lakes separated by large distances
Jackie K. Zorz et al.
NATURE COMMUNICATIONS (2019)
Methods for normalizing microbiome data: An ecological perspective
Donald T. McKnight et al.
METHODS IN ECOLOGY AND EVOLUTION (2019)
Abundance-occupancy distributions to prioritize plant core microbiome membership
Ashley Shade et al.
CURRENT OPINION IN MICROBIOLOGY (2019)
Defining the core microbiome of the symbiotic dinoflagellate, Symbiodinium
Caitlin A. Lawson et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2018)
Cycad-feeding insects share a core gut microbiome
Shayla Salzman et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2018)
Keystone taxa as drivers of microbiome structure and functioning
Samiran Banerjee et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Investigation of the core microbiome in main soil types from the East European plain
Elizaveta V. Pershina et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2018)
Ecological patterns in the skin microbiota of frogs from tropical Australia
Keith Christian et al.
ECOLOGY AND EVOLUTION (2018)
The structure and function of the global citrus rhizosphere microbiome
Jin Xu et al.
NATURE COMMUNICATIONS (2018)
The Microbiome of the Cosmopolitan Diatom Leptocylindrus Reveals Significant Spatial and Temporal Variability
Penelope A. Ajani et al.
FRONTIERS IN MICROBIOLOGY (2018)
Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies
Rachael E. Antwis et al.
MICROBIOME (2018)
Stable Core Gut Microbiota across the Freshwater-to-Saltwater Transition for Farmed Atlantic Salmon
Knut Rudi et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)
Evaluating the core microbiota in complex communities: A systematic investigation
Carmen Astudillo-Garcia et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers
Markus V. Lindh et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Where less may be more: how the rare biosphere pulls ecosystems strings
Alexandre Jousset et al.
ISME JOURNAL (2017)
Caterpillars lack a resident gut microbiome
Tobin J. Hammer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Let the Core Microbiota Be Functional
Philippe Lemanceau et al.
TRENDS IN PLANT SCIENCE (2017)
Operation-driven heterogeneity and overlooked feed-associated populations in global anaerobic digester microbiome
Ran Mei et al.
WATER RESEARCH (2017)
Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits
Alexander B. Chase et al.
MBIO (2017)
Core Microbiota and Metabolome of Vitis vinifera L. cv. Corvina Grapes and Musts
Irene Stefanini et al.
FRONTIERS IN MICROBIOLOGY (2017)
Microbiome Datasets Are Compositional: And This Is Not Optional
Gregory B. Gloor et al.
FRONTIERS IN MICROBIOLOGY (2017)
Inheritance and Establishment of Gut Microbiota in Chickens
Jinmei Ding et al.
FRONTIERS IN MICROBIOLOGY (2017)
Core fecal microbiota of domesticated herbivorous ruminant, hindgut fermenters, and monogastric animals
Michelle M. O' Donnell et al.
MICROBIOLOGYOPEN (2017)
Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees
Bram Beckers et al.
MICROBIOME (2017)
Normalization and microbial differential abundance strategies depend upon data characteristics
Sophie Weiss et al.
MICROBIOME (2017)
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Amnon Amir et al.
MSYSTEMS (2017)
Seawater transfer alters the intestinal microbiota profiles of Atlantic salmon (Salmo salar L.)
Carola E. Dehler et al.
SCIENTIFIC REPORTS (2017)
Evidence for rapid, tide-related shifts in the microbiome of the coral Coelastrea aspera
M. J. Sweet et al.
CORAL REEFS (2017)
The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application
Yun Kit Yeoh et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
The activated sludge ecosystem contains a core community of abundant organisms
Aaron M. Saunders et al.
ISME JOURNAL (2016)
Temporal Stability of the Human Skin Microbiome
Julia Oh et al.
CELL (2016)
Latitude delineates patterns of biogeography in terrestrial Streptomyces
Mallory J. Choudoir et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
Corals' microbial sentinels The coral microbiome will be key to future reef health
Tracy D. Ainsworth et al.
SCIENCE (2016)
The Microbial Signature Provides Insight into the Mechanistic Basis of Coral Success across Reef Habitats
Alejandra Hernandez-Agreda et al.
MBIO (2016)
Estimating and comparing microbial diversity in the presence of sequencing errors
Chun-Huo Chiu et al.
PEERJ (2016)
Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality
Yue Jiang et al.
MICROBIOME (2016)
The reproductive tracts of two malaria vectors are populated by a core microbiome and by gender-and swarm-enriched microbial biomarkers
Nicola Segata et al.
SCIENTIFIC REPORTS (2016)
Characterising the microbiome of Corallina officinalis, a dominant calcified intertidal red alga
Juliet Brodie et al.
FEMS MICROBIOLOGY ECOLOGY (2016)
The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts
Tracy D. Ainsworth et al.
ISME JOURNAL (2015)
Structure, variation, and assembly of the root-associated microbiomes of rice
Joseph Edwards et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
Gemma Henderson et al.
SCIENTIFIC REPORTS (2015)
Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives
Klaus Schlaeppi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Oligotyping analysis of the human oral microbiome
A. Murat Eren et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
Paul J. McMurdie et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Biogeography rather than association with cyanobacteria structures symbiotic microbial communities in the marine sponge Petrosia ficiformis
Ilia Burgsdorf et al.
FRONTIERS IN MICROBIOLOGY (2014)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses
Tomas Vetrovsky et al.
PLOS ONE (2013)
Analyses of the Stability and Core Taxonomic Memberships of the Human Microbiome
Kelvin Li et al.
PLOS ONE (2013)
Long-Term Temporal Analysis of the Human Fecal Microbiota Revealed a Stable Core of Dominant Bacterial Species
Ines Martinez et al.
PLOS ONE (2013)
Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling
Ryan J. Newton et al.
PLOS ONE (2013)
Identification of a Core Bacterial Community within the Large Intestine of the Horse
Kirsty Dougal et al.
PLOS ONE (2013)
Microbiome of the upper troposphere: Species composition and prevalence, effects of tropical storms, and atmospheric implications
Natasha DeLeon-Rodriguez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Evidence for a persistent microbial seed bank throughout the global ocean
Sean M. Gibbons et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The Long-Term Stability of the Human Gut Microbiota
Jeremiah J. Faith et al.
SCIENCE (2013)
Functional and evolutionary insights into the simple yet specific gut microbiota of the honey bee from metagenomic analysis
Philipp Engel et al.
GUT MICROBES (2013)
Defining a Healthy Human Gut Microbiome: Current Concepts, Future Directions, and Clinical Applications
Fredrik Backhed et al.
CELL HOST & MICROBE (2012)
Beyond the Venn diagram: the hunt for a core microbiome
Ashley Shade et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges
Susanne Schmitt et al.
ISME JOURNAL (2012)
Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis
Karen E. Sullam et al.
MOLECULAR ECOLOGY (2012)
Defining the core Arabidopsis thaliana root microbiome
Derek S. Lundberg et al.
NATURE (2012)
A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters
Susan M. Huse et al.
PLOS ONE (2012)
Independent Studies Using Deep Sequencing Resolve the Same Set of Core Bacterial Species Dominating Gut Communities of Honey Bees
Zakee L. Sabree et al.
PLOS ONE (2012)
Moving pictures of the human microbiome
J. Gregory Caporaso et al.
GENOME BIOLOGY (2011)
A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes
Ben P. Willing et al.
GASTROENTEROLOGY (2010)
Evolution and Ecology of Species Range Limits
Jason P. Sexton et al.
ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2009)
Defining the healthy core microbiome of oral microbial communities
Egija Zaura et al.
BMC MICROBIOLOGY (2009)
The seasonal structure of microbial communities in the Western English Channel
Jack A. Gilbert et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
Micah Hamady et al.
GENOME RESEARCH (2009)
A core gut microbiome in obese and lean twins
Peter J. Turnbaugh et al.
NATURE (2009)
The Human Microbiome Project
Peter J. Turnbaugh et al.
NATURE (2007)
Microbial diversity in the deep sea and the underexplored rare biosphere
Mitchell L. Sogin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes
T Coenye et al.
FEMS MICROBIOLOGY LETTERS (2003)
Abundance-occupancy relationships
KJ Gaston et al.
JOURNAL OF APPLIED ECOLOGY (2000)