期刊
PLANT JOURNAL
卷 109, 期 6, 页码 1535-1558出版社
WILEY
DOI: 10.1111/tpj.15650
关键词
Brachypodium; chromosomal barcodes; 'ghost' progenitor genomes; phylogenomic subgenome detection pipeline; polyploids
资金
- DOE [DE-AC02-05CH11231, FP00006675]
- Spanish Ministries of Economy and Competitivity (Mineco)
- Science and Innovation (MICINN) [CGL2016-79790-P, PID2019-108195GB-I00]
- University of Zaragoza [UZ2016_TEC02]
- Harvard University
- Office of Science of the US Department of Energy (DOE) [DE-AC02-05CH11231, FP00006675]
- Mineco FPI PhD fellowship
- Mineco
- Ibercaja-CAI Mobility Grants
- Instituto de Estudios Altoaragoneses Grant
- Fundacion ARAID
- European Social Fund/Aragon Government Bioflora Research Grants [A01-17R, A01-20R]
- Research Excellence Initiative program
We designed a subgenome detection pipeline (PhyloSD) that can identify the progenitor subgenomes of six grass Brachypodium allopolyploids and infer their hypothetical evolutionary scenarios for their origins.
We designed a subgenome detection pipeline (PhyloSD) that allowed us to identify the three known and four ghost diploid progenitor genomes of six grass Brachypodium allopolyploids, and to infer the hypothetical evolutionary scenarios for their origins. Our pipeline can be used with either transcriptome or genome data, and retrieves the progenitor subgenomes of both allopolyploid and autopolyploid species.
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