4.8 Article

Fractal and Knot-Free Chromosomes Facilitate Nucleoplasmic Transport

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Physics, Multidisciplinary

Chromatin mechanics dictates subdiffusion and coarsening dynamics of embedded condensates

Daniel S. W. Lee et al.

Summary: The study demonstrates that droplet growth dynamics are directly inhibited by the chromatin-dense environment, leading to an anomalously slow coarsening exponent. Through scaling arguments and simulations, the researchers show that this arrested growth can arise due to subdiffusion of individual condensates. Tracking the fluctuating motion of condensates within chromatin reveals a subdiffusive exponent, explaining the anomalous coarsening behaviour.

NATURE PHYSICS (2021)

Review Biochemistry & Molecular Biology

Visualizing Live Chromatin Dynamics through CRISPR-Based Imaging Techniques

Narendra Chaudhary et al.

Summary: The three-dimensional organization and time-dependent changes of chromatin significantly influence cellular functions, and visualizing these changes in individual cells remains challenging. CRISPR systems offer promising strategies for this visualization, but face limitations such as background signals, non-specific binding, and rapid photobleaching. Modifications to the CRISPR system aim to enhance target detection reliability and reduce required target size.

MOLECULES AND CELLS (2021)

Article Biotechnology & Applied Microbiology

Hi-D: nanoscale mapping of nuclear dynamics in single living cells

Haitham A. Shaban et al.

GENOME BIOLOGY (2020)

Article Biophysics

Measuring Mobility in Chromatin by Intensity-Sorted FCS

Melody Di Bona et al.

BIOPHYSICAL JOURNAL (2019)

Article Multidisciplinary Sciences

Mapping the spectrum of 3D communities in human chromosome conformation capture data

Sang Hoon Lee et al.

SCIENTIFIC REPORTS (2019)

Article Physics, Multidisciplinary

Fractal Folding and Medium Viscoelasticity Contribute Jointly to Chromosome Dynamics

K. E. Polovnikov et al.

PHYSICAL REVIEW LETTERS (2018)

Article Biochemistry & Molecular Biology

Dynamic Organization of Chromatin Domains Revealed by Super-Resolution Live-Cell Imaging

Tadasu Nozaki et al.

MOLECULAR CELL (2017)

Article Biochemical Research Methods

Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells

Soya Shinkai et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Physics, Fluids & Plasmas

Facilitated diffusion of proteins through crumpled fractal DNA globules

Jan Smrek et al.

PHYSICAL REVIEW E (2015)

Article Physics, Multidisciplinary

Anomalous Diffusion in Fractal Globules

M. V. Tamm et al.

PHYSICAL REVIEW LETTERS (2015)

Article Multidisciplinary Sciences

Remodeling nuclear architecture allows efficient transport of herpesvirus capsids by diffusion

Jens B. Bosse et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Education, Scientific Disciplines

Simulation of the active Brownian motion of a microswimmer

Giorgio Volpe et al.

AMERICAN JOURNAL OF PHYSICS (2014)

Article Biophysics

Dynamics of the DNA repair proteins WRN and BLM in the nucleoplasm and nucleoli

Kristian Moss Bendtsen et al.

EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2014)

Review Physics, Multidisciplinary

From a melt of rings to chromosome territories: the role of topological constraints in genome folding

Jonathan D. Halverson et al.

REPORTS ON PROGRESS IN PHYSICS (2014)

Article Multidisciplinary Sciences

Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells

Michael Baum et al.

NATURE COMMUNICATIONS (2014)

Article Biochemistry & Molecular Biology

Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System

Baohui Chen et al.

Article Chemistry, Physical

Revisiting Point FRAP to Quantitatively Characterize Anomalous Diffusion in Live Cells

Matthew K. Daddysman et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2013)

Review Physics, Multidisciplinary

Anomalous transport in the crowded world of biological cells

Felix Hoefling et al.

REPORTS ON PROGRESS IN PHYSICS (2013)

Article Physics, Multidisciplinary

STRANGE KINETICS of single molecules in living cells

Eli Barkai et al.

PHYSICS TODAY (2012)

Article Biochemistry & Molecular Biology

The fractal globule as a model of chromatin architecture in the cell

Leonid A. Mirny

CHROMOSOME RESEARCH (2011)

Article Physics, Fluids & Plasmas

Ergodicity convergence test suggests telomere motion obeys fractional dynamics

E. Kepten et al.

PHYSICAL REVIEW E (2011)

Article Physics, Fluids & Plasmas

Hard-wall interactions in soft matter systems: Exact numerical treatment

Hans Behringer et al.

PHYSICAL REVIEW E (2011)

Article Physics, Multidisciplinary

Facilitated Diffusion of Proteins on Chromatin

O. Benichou et al.

PHYSICAL REVIEW LETTERS (2011)

Article Cell Biology

The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells

Martina Huranova et al.

JOURNAL OF CELL BIOLOGY (2010)

Article Chemistry, Physical

Anomalous diffusion in the interphase cell nucleus: The effect of spatial correlations of chromatin

Christian C. Fritsch et al.

JOURNAL OF CHEMICAL PHYSICS (2010)

Article Biochemistry & Molecular Biology

Single molecule tracking of quantum dot-labeled mRNAs in a cell nucleus

Yo Ishihama et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2009)

Article Physics, Multidisciplinary

Reinforced walks in two and three dimensions

Jacob G. Foster et al.

NEW JOURNAL OF PHYSICS (2009)

Article Physics, Multidisciplinary

Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells

I. Bronstein et al.

PHYSICAL REVIEW LETTERS (2009)

Article Multidisciplinary Sciences

Anomalous yet Brownian

Bo Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

Erez Lieberman-Aiden et al.

SCIENCE (2009)

Article Biophysics

Probing the nanoscale viscoelasticity of intracellular fluids in living cells

Gernot Guigas et al.

BIOPHYSICAL JOURNAL (2007)

Article Biochemical Research Methods

Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes

Nathalie Arhel et al.

NATURE METHODS (2006)

Article Biophysics

The DNA binding activity of p53 displays reaction-diffusion kinetics

Peter Hinow et al.

BIOPHYSICAL JOURNAL (2006)

Article Physics, Multidisciplinary

Physical nature of bacterial cytoplasm

I Golding et al.

PHYSICAL REVIEW LETTERS (2006)

Article Cell Biology

Rapid, diffusional shuttling of Poly(A) RNA between nuclear speckles and the nucleoplasm

JCR Politz et al.

MOLECULAR BIOLOGY OF THE CELL (2006)

Article Cell Biology

Histone acetylation increases chromatin accessibility

SM Görisch et al.

JOURNAL OF CELL SCIENCE (2005)

Article Multidisciplinary Sciences

Mechanism of mRNA transport in the nucleus

DY Vargas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biophysics

Anomalous diffusion of proteins due to molecular crowding

DS Banks et al.

BIOPHYSICAL JOURNAL (2005)

Article Physics, Multidisciplinary

Anomalous diffusion probes microstructure dynamics of entangled F-actin networks

IY Wong et al.

PHYSICAL REVIEW LETTERS (2004)

Article Multidisciplinary Sciences

Nuclear body movement is determined by chromatin accessibility and dynamics

SM Görisch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Visualizing telomere dynamics in living mammalian cells using PNA probes

C Molenaar et al.

EMBO JOURNAL (2003)

Article Cell Biology

Diffusion-based transport of nascent ribosomes in the nucleus

JCR Politz et al.

MOLECULAR BIOLOGY OF THE CELL (2003)

Article Cell Biology

Cajal Body dynamics and association with chromatin are ATP-dependent

M Platani et al.

NATURE CELL BIOLOGY (2002)

Article Biochemistry & Molecular Biology

Nuclear dynamics of RAD52 group homologous recombination proteins in response to DNA damage

J Essers et al.

EMBO JOURNAL (2002)

Article Biochemistry & Molecular Biology

Chromatin motion is constrained by association with nuclear compartments in human cells

JR Chubb et al.

CURRENT BIOLOGY (2002)

Article Physics, Multidisciplinary

A measure of data collapse for scaling

SM Bhattacharjee et al.

JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL (2001)

Article Multidisciplinary Sciences

Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure

Y Cui et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)