4.8 Article

Chemical capping improves template switching and enhances sequencing of small RNAs

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Systematic assessment of commercially available low-input miRNA library preparation kits

Fatima Heinicke et al.

RNA BIOLOGY (2020)

Article Biochemistry & Molecular Biology

A low-bias and sensitive small RNA library preparation method using randomized splint ligation

Sean Maguire et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biochemistry & Molecular Biology

GENCODE reference annotation for the human and mouse genomes

Adam Frankish et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemical Research Methods

PennDiff: detecting differential alternative splicing and transcription by RNA sequencing

Yu Hu et al.

BIOINFORMATICS (2018)

Article Biotechnology & Applied Microbiology

Systematic comparison of small RNA library preparation protocols for next-generation sequencing

Cloelia Dard-Dascot et al.

BMC GENOMICS (2018)

Article Multidisciplinary Sciences

SMRT-Cappable-seq reveals complex operon variants in bacteria

Bo Yan et al.

NATURE COMMUNICATIONS (2018)

Article Biochemistry & Molecular Biology

A cost effective 5′ selective single cell transcriptome profiling approach with improved UMI design

Marie-Jeanne Arguel et al.

NUCLEIC ACIDS RESEARCH (2017)

Review Biochemistry & Molecular Biology

Next-generation sequencing technologies for detection of modified nucleotides in RNAs

Schraga Schwartz et al.

RNA BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods

Noa Liscovitch-Brauer et al.

Article Biochemistry & Molecular Biology

mRNA capping: biological functions and applications

Anand Ramanathan et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Cell Biology

Anatomy of RISC: how do small RNAs and chaperones activate Argonaute proteins?

Kotaro Nakanishi

WILEY INTERDISCIPLINARY REVIEWS-RNA (2016)

Article Biochemical Research Methods

DiffLogo: a comparative visualization of sequence motifs

Martin Nettling et al.

BMC BIOINFORMATICS (2015)

Article Biotechnology & Applied Microbiology

NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites

Jason S. Cumbie et al.

BMC GENOMICS (2015)

Article Computer Science, Interdisciplinary Applications

Fitting Linear Mixed-Effects Models Using lme4

Douglas Bates et al.

JOURNAL OF STATISTICAL SOFTWARE (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

Polynucleotide 3′-terminal Phosphate Modifications by RNA and DNA Ligases

Alexander M. Zhelkovsky et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2014)

Article Biochemistry & Molecular Biology

Biases in small RNA deep sequencing data

Carsten A. Raabe et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

Shanrong Zhao et al.

PLOS ONE (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Medicine, Research & Experimental

Circulating microRNA-21 as noninvasive predictive biomarker for response in cancer immunotherapy

Zhiyu Wang et al.

MEDICAL HYPOTHESES (2013)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

Marc R. Friedlaender et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Structural bias in T4 RNA ligase-mediated 3′-adapter ligation

Fanglei Zhuang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

CAGE (Cap Analysis of Gene Expression): A Protocol for the Detection of Promoter and Transcriptional Networks

Hazuki Takahashi et al.

GENE REGULATORY NETWORKS: METHODS AND PROTOCOLS (2012)

Article Biochemistry & Molecular Biology

Barcoding bias in high-throughput multiplex sequencing of miRNA

Shahar Alon et al.

GENOME RESEARCH (2011)

Review Biochemistry & Molecular Biology

The Coded Functions of Noncoding RNAs for Gene Regulation

Sojin An et al.

MOLECULES AND CELLS (2011)

Article Biochemistry & Molecular Biology

Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing

Anitha D. Jayaprakash et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

The rocks and shallows of deep RNA sequencing: Examples in the Vibrio cholerae RNome

Carsten A. Raabe et al.

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Editorial Material Biochemistry & Molecular Biology

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

Da Wei Huang et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

Patricia P. Chan et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biotechnology & Applied Microbiology

Hidden layers of human small RNAs

Hideya Kawaji et al.

BMC GENOMICS (2008)

Article Biochemistry & Molecular Biology

Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis

L Petalidis et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Novel anti-reverse cap analogs with superior translational properties

J Jemielity et al.

Article Biochemical Research Methods

5′ RACE by tailing a general template-switching oligonucleotide

XZ Shi et al.

BIOTECHNIQUES (2000)