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注意：仅列出部分参考文献，下载原文获取全部文献信息。DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis
Shannon J. McKie et al.
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Travis J. Sanders et al.
FRONTIERS IN MICROBIOLOGY (2021)
Archaea: A Gold Mine for Topoisomerase Diversity
Florence Garnier et al.
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The reverse gyrase TopR1 is responsible for the homeostatic control of DNA supercoiling in the hyperthermophilic archaeon Sulfolobus solfataricus
Mohea Couturier et al.
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Expanding the type IIB DNA topoisomerase family: identification of new topoisomerase and topoisomerase-like proteins in mobile genetic elements
Tomio S. Takahashi et al.
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Travis J. Sanders et al.
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Bilal El Houdaigui et al.
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The Evolution of Reverse Gyrase Suggests a Nonhyperthermophilic Last Universal Common Ancestor
Ryan J. Catchpole et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
Chromatinization of Escherichia coli with archaeal histones
Maria Rojec et al.
ELIFE (2019)
Increase of positive supercoiling in a hyperthermophilic archaeon after UV irradiation
A. Gorlas et al.
EXTREMOPHILES (2019)
Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome
Dmitry Sutormin et al.
NUCLEIC ACIDS RESEARCH (2019)
DNA supercoiling and transcription in bacteria: a two-way street
Charles J. Dorman
BMC MOLECULAR AND CELL BIOLOGY (2019)
A series of new E-coli-Thermococcus shuttle vectors compatible with previously existing vectors
Ryan Catchpole et al.
EXTREMOPHILES (2018)
Study of ciprofloxacin biodegradation by a Thermus sp isolated from pharmaceutical sludge
Lan-jia Pan et al.
JOURNAL OF HAZARDOUS MATERIALS (2018)
Reverse gyrase is essential for microbial growth at 95 °C
Gina L. Lipscomb et al.
EXTREMOPHILES (2017)
The growing tree of Archaea: new perspectives on their diversity, evolution and ecology
Panagiotis S. Adam et al.
ISME JOURNAL (2017)
Structure of histone-based chromatin in Archaea
Francesca Mattiroli et al.
SCIENCE (2017)
ImageJ2: ImageJ for the next generation of scientific image data
Curtis T. Rueden et al.
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Genome scale patterns of supercoiling in a bacterial chromosome
Avantika Lal et al.
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MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis
Adrien Ducret et al.
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Bacterial gene import and mesophilic adaptation in archaea
Purificacion Lopez-Garcia et al.
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The interplay between nucleoid organization and transcription in archaeal genomes
Eveline Peeters et al.
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The MEME Suite
Timothy L. Bailey et al.
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Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis
Dominik Jaeger et al.
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Supercoiling in DNA and chromatin
Nick Gilbert et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)
Global Phylogenomic Analysis Disentangles the Complex Evolutionary History of DNA Replication in Archaea
Kasie Raymann et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Fluoroquinolone-Gyrase-DNA Complexes TWO MODES OF DRUG BINDING
Arkady Mustaev et al.
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
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Temperature Dependence of the DNA Double Helix at the Nanoscale: Structure, Elasticity, and Fluctuations
Sam Meyer et al.
BIOPHYSICAL JOURNAL (2013)
Archaeal nucleosome positioning in vivo and in vitro is directed by primary sequence motifs
Narasimharao Nalabothula et al.
BMC GENOMICS (2013)
An alternative beads-on-a-string chromatin architecture in Thermococcus kodakarensis
Hugo Maruyama et al.
EMBO REPORTS (2013)
A simple procedure to determine the infectivity and host range of viruses infecting anaerobic and hyperthermophilic microorganisms
Aurore Gorlas et al.
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A small basic protein from the brz-brb operon is involved in regulation of bop transcription in Halobacterium salinarum
Valery Tarasov et al.
BMC MOLECULAR BIOLOGY (2011)
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Mathieu Groussin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
All tangled up: how cells direct, manage and exploit topoisomerase function
Seychelle M. Vos et al.
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Thermococcus kodakarensis Genetics: TK1827-Encoded β-Glycosidase, New Positive-Selection Protocol, and Targeted and Repetitive Deletion Technology
Thomas J. Santangelo et al.
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Genetic analysis of DNA repair in the hyperthermophilic archaeon, Thermococcus kodakaraensis
Ryosuke Fujikane et al.
GENES & GENETIC SYSTEMS (2010)
A naturally chimeric type IIA topoisomerase in Aquifex aeolicus highlights an evolutionary path for the emergence of functional paralogs
Elsa M. Tretter et al.
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Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Phylogenomics of DNA topoisomerases: their origin and putative roles in the emergence of modern organisms
Patrick Forterre et al.
NUCLEIC ACIDS RESEARCH (2009)
Parallel adaptations to high temperatures in the Archaean eon
Bastien Boussau et al.
NATURE (2008)
DNA topoisomerases: harnessing and constraining energy to govern chromosome topology
Allyn J. Schoeffler et al.
QUARTERLY REVIEWS OF BIOPHYSICS (2008)
Origin and evolution of DNA topoisomerases
Patrick Forterre et al.
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Archaeal histones and the origin of the histone fold
Kathleen Sandman et al.
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TS Hsieh et al.
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Selective degradation of reverse gyrase and DNA fragmentation induced by alkylating agent in the archaeon Sulfolobus solfataricus
Anna Valenti et al.
NUCLEIC ACIDS RESEARCH (2006)
Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis
T Sato et al.
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Inhibition of archaeal growth and DNA topoisomerase VI activities by the Hsp90 inhibitor radicicol
D Gadelle et al.
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Disentangling DNA during replication: a tale of two strands
CD Hardy et al.
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Reverse gyrase recruitment to DNA after UV light irradiation in Sulfolobus solfataricus
A Napoli et al.
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Reverse gyrase has heat-protective DNA chaperone activity independent of supercoiling
M Kampmann et al.
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Reverse gyrase is not a prerequisite for hyperthermophilic life
H Atomi et al.
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Transcription by an archaeal RNA polymerase is slowed but not blocked by an archaeal nucleosome
YM Xie et al.
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Phylogenomics of type II DNA topoisomerases
D Gadelle et al.
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Cellular roles of DNA topoisomerases: A molecular perspective
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A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein
P Forterre
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Topological challenges to DNA replication: Conformations at the fork
L Postow et al.
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Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli
EL Zechiedrich et al.
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The COG database: a tool for genome-scale analysis of protein functions and evolution
RL Tatusov et al.
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Plasmid pGS5 from the hyperthermophilic archaeon Archaeaglobus profundus is negatively supercoiled
P Lopez-Garcia et al.
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