4.6 Article

Seed microbiota revealed by a large-scale meta-analysis including 50 plant species

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Plant Sciences

Endophytic Microbiome Variation Among Single Plant Seeds

A. F. Bintarti et al.

Summary: The seed microbiome is important for plant microbiome assembly and the transmission of beneficial symbionts. A new DNA extraction protocol from individual seeds revealed high microbiome variability at the plant level, suggesting that pooling seeds from the same plant could be utilized for microbiome assessments. This study contributes to understanding the plant-microbiome interactions that support the health of agricultural and environmental ecosystems.

PHYTOBIOMES JOURNAL (2022)

Article Microbiology

Experimental evidence of microbial inheritance in plants and transmission routes from seed to phyllosphere and root

Ahmed Abdelfattah et al.

Summary: The study found that the seed microbiome is diverse, with the microbial composition in leaves and embryos showing similarity, while roots and pericarps have less diverse and distinct microbial communities. The establishment of root and leaf communities involves inheritance, niche differentiation, and different transmission routes.

ENVIRONMENTAL MICROBIOLOGY (2021)

Article Agronomy

The microbial community associated with pea seeds (Pisum sativum) of different geographical origins

Valentine Chartrel et al.

Summary: The study investigated the impact of geographical origins on the microbial communities associated with pea seeds from storage locations in different countries. The results showed that although the pea seed microbiota shared a dominant core microbiota at the genus level, seeds exhibited a species-specific microbial signature with variable abundances according to origin. Origin was identified as the main driver of the composition of the pea seed microbiota.

PLANT AND SOIL (2021)

Article Ecology

Variable influences of soil and seed-associated bacterial communities on the assembly of seedling microbiomes

Corinne M. Walsh et al.

Summary: The microbial communities in distinct soils and seeds have a significant impact on the bacterial community composition of seedlings. The contributions of soil and seed microbiomes to the seedling microbiome are variable and dependent on the specific compositions of the soil and seed microbial communities. Understanding these relationships can help predict how the plant microbiome assembles and how the seedling microbiome can be manipulated to improve plant health.

ISME JOURNAL (2021)

Article Microbiology

Transmission of Seed and Soil Microbiota to Seedling

Aude Rochefort et al.

Summary: The study shows that soil microbiota plays a crucial role in the assembly of seedling microbiota, while seed microbiota has a limited influence. Seedling microbiota primarily originates from soil, with soil bacteria being more effectively transmitted to seedlings than fungi. Successful plant-microbiome engineering should involve rare taxa from seed or soil microbiota.

MSYSTEMS (2021)

Article Plant Sciences

Bacterial seed endophyte shapes disease resistance in rice

Haruna Matsumoto et al.

Summary: The study revealed that the endophyte bacterium Sphingomonas melonis can provide disease resistance to rice by producing anthranilic acid, inhibiting the virulence factor synthesis of the seed-borne pathogen Burkholderia plantarii. This finding offers new insights to combat globally widespread bacterial diseases threatening modern crop cultivation.

NATURE PLANTS (2021)

Article Plant Sciences

Contrasting effects of Rhizophagus irregularis versus bacterial and fungal seed endophytes on Trifolium repens plant-soil feedback

Mohamed Idbella et al.

Summary: Seed endophytes and AMF together influence plant behavior significantly, playing a crucial role in plant-soil feedback. Seed fungal endophytes generate conspecific negative feedback, while seed bacterial endophytes shift feedback from negative to positive. The simultaneous occurrence of seed endophytes and AMF may either generate or expand negative plant-soil feedback effects.

MYCORRHIZA (2021)

Article Multidisciplinary Sciences

Insect pollination: an ecological process involved in the assembly of the seed microbiota

Alberto Prado et al.

SCIENTIFIC REPORTS (2020)

Editorial Material Ecology

Applying the core microbiome to understand host-microbe systems

Alice Risely

JOURNAL OF ANIMAL ECOLOGY (2020)

Letter Biotechnology & Applied Microbiology

PICRUSt2 for prediction of metagenome functions

Gavin M. Douglas et al.

NATURE BIOTECHNOLOGY (2020)

Review Microbiology

The Plant Microbiome: From Ecology to Reductionism and Beyond

Connor R. Fitzpatrick et al.

ANNUAL REVIEW OF MICROBIOLOGY, VOL 74, 2020 (2020)

Article Plant Sciences

Populations of the Parasitic PlantPhelipanche ramosaInfluence Their Seed Microbiota

Sarah Huet et al.

FRONTIERS IN PLANT SCIENCE (2020)

Article Biotechnology & Applied Microbiology

The differences and overlaps in the seed-resident microbiome of four Leguminous and three Gramineous forages

Ya Dai et al.

MICROBIAL BIOTECHNOLOGY (2020)

Review Microbiology

Plant-microbiome interactions: from community assembly to plant health

Pankaj Trivedi et al.

NATURE REVIEWS MICROBIOLOGY (2020)

Article Microbiology

Temporal dynamics of bacterial communities during seed development and maturation

Guillaume Chesneau et al.

FEMS MICROBIOLOGY ECOLOGY (2020)

Article Plant Sciences

Heritability and Functional Importance of the Setaria viridis Bacterial Seed Microbiome

Carolina Escobar Rodriguez et al.

PHYTOBIOMES JOURNAL (2020)

Article Biochemistry & Molecular Biology

Nicotiana tabacum seed endophytic communities share a common core structure and genotype-specific signatures in diverging cultivars

Xiaoyulong Chen et al.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)

Article Microbiology

Priority effects of wheat seed endophytes on a rhizosphere symbiosis

Mary E. Ridout et al.

SYMBIOSIS (2019)

Letter Biotechnology & Applied Microbiology

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen et al.

NATURE BIOTECHNOLOGY (2019)

Review Plant Sciences

Seed Coating: A Tool for Delivering Beneficial Microbes to Agricultural Crops

Ines Rocha et al.

FRONTIERS IN PLANT SCIENCE (2019)

Article Biochemistry & Molecular Biology

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

Rolf Henrik Nilsson et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Plant Sciences

Identification and Characterization of the Core Rice Seed Microbiome

Alexander W. Eyre et al.

PHYTOBIOMES JOURNAL (2019)

Review Agronomy

The seed microbiome: Origins, interactions, and impacts

Eric B. Nelson

PLANT AND SOIL (2018)

Article Microbiology

Genome-based evolutionary history of Pseudomonas spp

Cedar Hesse et al.

ENVIRONMENTAL MICROBIOLOGY (2018)

Article Biochemistry & Molecular Biology

Core Microbiome of Medicinal Plant Salvia miltiorrhiza Seed: A Rich Reservoir of Beneficial Microbes for Secondary Metabolism?

Haimin Chen et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Article Ecology

Saving seed microbiomes

Gabriele Berg et al.

ISME JOURNAL (2018)

Article Plant Sciences

Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence

Gloria Torres-Cortes et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Microbiology

A Hypothetical Bottleneck in the Plant Microbiome

George Newcombe et al.

FRONTIERS IN MICROBIOLOGY (2018)

Review Plant Sciences

Beneficial Services of Arbuscular Mycorrhizal Fungi - From Ecology to Application

Min Chen et al.

FRONTIERS IN PLANT SCIENCE (2018)

Article Plant Sciences

Tomato Seeds Preferably Transmit Plant Beneficial Endophytes

Alessandro Bergna et al.

PHYTOBIOMES JOURNAL (2018)

Review Microbiology

Ecological patterns of seed microbiome diversity, transmission, and assembly

Ashley Shade et al.

CURRENT OPINION IN MICROBIOLOGY (2017)

Article Microbiology

Terroir is a key driver of seed-associated microbial assemblages

Stephanie Klaedtke et al.

ENVIRONMENTAL MICROBIOLOGY (2016)

Review Biotechnology & Applied Microbiology

Microbial inoculation of seed for improved crop performance: issues and opportunities

Maureen O'Callaghan

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2016)

Review Ecology

Giving back to the community: microbial mechanisms of plant-soil interactions

Sur Herrera Paredes et al.

FUNCTIONAL ECOLOGY (2016)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Review Microbiology

Microbiota and Host Nutrition across Plant and Animal Kingdoms

Stephane Hacquard et al.

CELL HOST & MICROBE (2015)

Review Plant Sciences

The importance of the microbiome of the plant holobiont

Philippe Vandenkoornhuyse et al.

NEW PHYTOLOGIST (2015)

Article Biotechnology & Applied Microbiology

Emergence Shapes the Structure of the Seed Microbiota

Matthieu Barret et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Agronomy

Transmission of 'Candidatus Liberibacter solanacearum' in carrot seeds

E. Bertolini et al.

PLANT PATHOLOGY (2015)

Article Biotechnology & Applied Microbiology

Nitrogen-Fixing Rhizobial Strains Isolated from Common Bean Seeds: Phylogeny, Physiology, and Genome Analysis

Yolanda Mora et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

Article Agronomy

Phylogeny and evolution of plant pathogenic oomycetes-a global overview

Marco Thines

EUROPEAN JOURNAL OF PLANT PATHOLOGY (2014)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Review Microbiology

Beyond the Venn diagram: the hunt for a core microbiome

Ashley Shade et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Article Chemistry, Applied

Mycotoxin contamination of cereal grain commodities in relation to climate in North West Europe

H. J. Van der Fels-Klerx et al.

FOOD ADDITIVES AND CONTAMINANTS PART A-CHEMISTRY ANALYSIS CONTROL EXPOSURE & RISK ASSESSMENT (2012)

Article Biotechnology & Applied Microbiology

Transmission of Plant-Pathogenic Bacteria by Nonhost Seeds without Induction of an Associated Defense Reaction at Emergence

Armelle Darrasse et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biochemistry & Molecular Biology

Adhesion and Fitness in the Bean Phyllosphere and Transmission to Seed of Xanthomonas fuscans subsp fuscans

A. Darsonval et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2009)