4.6 Editorial Material

From mapping kidney function to mechanism and prediction

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Article Cell Biology

Kidney disease genetic risk variants alter lysosomal beta-mannosidase (MANBA) expression and disease severity

Xiangchen Gu et al.

Summary: The study identified a potential correlation between low expression of MANBA in the kidneys of individuals with CKD risk genotype and an increased incidence of renal failure in individuals with rare loss-of-function coding variants in MANBA. The findings highlight the importance of the MANBA gene in kidney health, as it is highly expressed in human kidney tubule cells and appears to play a role in kidney disease development.

SCIENCE TRANSLATIONAL MEDICINE (2021)

Article Genetics & Heredity

Uncovering genetic mechanisms of hypertension through multi-omic analysis of the kidney

James M. Eales et al.

Summary: Analyzing genotype, gene expression, alternative splicing, and DNA methylation profiles of human kidney samples can provide insights into the effects of common variants influencing blood pressure. Mendelian randomization revealed the effects of blood pressure on renal outcomes.

NATURE GENETICS (2021)

Article Urology & Nephrology

Polygenic Risk Scores for Kidney Function and Their Associations with Circulating Proteome, and Incident Kidney Diseases

Zhi Yu et al.

Summary: This study developed a genome-wide polygenic risk score (PRS) for eGFR, which was found to be significantly associated with a spectrum of kidney diseases and influenced the plasma proteome, primarily mediated by eGFR.

JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2021)

Article Genetics & Heredity

Mapping the genetic architecture of human traits to cell types in the kidney identifies mechanisms of disease and potential treatments

Xin Sheng et al.

Summary: This study generated cell-type-specific eQTL maps in the human kidney using over 600 microdissected kidney samples, highlighting the cell types influencing kidney function, hypertension, and other traits.

NATURE GENETICS (2021)

Review Genetics & Heredity

Gaining insight into metabolic diseases from human genetic discoveries

Melina Claussnitzer et al.

Summary: Large-scale genetic association studies have identified thousands of genetic risk loci with sequence variations more common in patients with metabolic diseases. While the molecular and cellular mechanisms affected by these common genetic variations remain mostly unknown, new genome-wide data types and analytical methodologies are paving the way for systematic variant-to-function studies, improving mechanistic understanding of disease biology.

TRENDS IN GENETICS (2021)

Article Multidisciplinary Sciences

A single genetic locus controls both expression of DPEP1/CHMP1A and kidney disease development via ferroptosis

Yuting Guan et al.

Summary: Identification of kidney disease genes DPEP1 and CHMP1A was achieved through a triangulation approach involving kidney function GWAS, human kidney expression, and methylation quantitative trait loci. Functional studies in mice and cells confirmed the roles of these genes in kidney disease, particularly through their involvement in the ferroptosis pathway.

NATURE COMMUNICATIONS (2021)

Article Multidisciplinary Sciences

Discovery and prioritization of variants and genes for kidney function in >1.2 million individuals

Kira J. Stanzick et al.

Summary: Identifying causal variants and genes for kidney function in genome-wide association studies remains challenging, but can be aided by larger sample sizes. Meta-analysis of GWAS for kidney function identified new loci and fine-mapped variants and genes, shedding light on the complex genetic architecture underlying kidney function. Fine-mapping also revealed specific associations with cystatin-based eGFR and blood urea nitrogen levels at multiple loci.

NATURE COMMUNICATIONS (2021)

Article Medicine, Research & Experimental

Transcriptome-wide association analysis identifies DACH1 as a kidney disease risk gene that contributes to fibrosis

Tomohito Doke et al.

Summary: The study integrated various methods to identify Dachshund homolog 1 (DACH1) as a kidney disease risk gene, revealing its crucial role in regulating the development of renal fibrosis.

JOURNAL OF CLINICAL INVESTIGATION (2021)

Article Health Care Sciences & Services

Medical records-based chronic kidney disease phenotype for clinical care and big data observational and genetic studies

Ning Shang et al.

Summary: The study implemented a portable and scalable electronic CKD phenotype to aid in early disease recognition and large-scale observational and genetic studies. Through manual validation and case-control validation, the algorithm showed high accuracy and detected a significant number of undetected CKD cases.

NPJ DIGITAL MEDICINE (2021)

Review Urology & Nephrology

Unravelling the complex genetics of common kidney diseases: from variants to mechanisms

Katie Marie Sullivan et al.

NATURE REVIEWS NEPHROLOGY (2020)