4.8 Article

Fast and flexible analysis of linked microbiome data with mako

期刊

NATURE METHODS
卷 19, 期 1, 页码 51-+

出版社

NATURE PORTFOLIO
DOI: 10.1038/s41592-021-01335-9

关键词

-

资金

  1. KU Leuven [STG/16/006]
  2. European Research Council under the European Union [801747]
  3. European Research Council (ERC) [801747] Funding Source: European Research Council (ERC)

向作者/读者索取更多资源

Mako is a software tool that converts microbiome data and networks into a graph database, allowing users to carry out network-based queries without programming knowledge. It is accompanied by a database compiled from 60 microbiome studies, and users can easily extend it with their own data. This work demonstrates Mako's strengths through examples of association partners linked to propionate production and comparison of network motifs across different habitat types.
Mako is a software tool that converts microbiome data and networks into a graph database and visualizes query results, thus allowing users without programming knowledge to carry out network-based queries. Mako is accompanied by a database compiled from 60 microbiome studies that is easily extended with the user's own data. We illustrate mako's strengths by enumerating association partners linked to propionate production and comparing frequencies of different network motifs across habitat types. This work describes mako, a tool for efficiently constructing and querying network databases with large-scale microbiome data.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.8
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

暂无数据
暂无数据