相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Twelve years of SAMtools and BCFtools
Petr Danecek et al.
GIGASCIENCE (2021)
Spatial concordance of DNA methylation classification in diffuse glioma
Niels Verburg et al.
NEURO-ONCOLOGY (2021)
Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma
Aparna Bhaduri et al.
CELL STEM CELL (2020)
The repertoire of mutational signatures in human cancer
Ludmil B. Alexandrov et al.
NATURE (2020)
Single-cell transcriptional diversity is a hallmark of developmental potential
Gunsagar S. Gulati et al.
SCIENCE (2020)
A sensitive assay for dNTPs based on long synthetic oligonucleotides, EvaGreen dye and inhibitor-resistant high-fidelity DNA polymerase
Janne Purhonen et al.
NUCLEIC ACIDS RESEARCH (2020)
Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers
Hoon Kim et al.
NATURE GENETICS (2020)
Evolutionary Trajectories of IDHWT Glioblastomas Reveal a Common Path of Early Tumorigenesis Instigated Years ahead of Initial Diagnosis
Verena Koerber et al.
CANCER CELL (2019)
Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia
Federico Gaiti et al.
NATURE (2019)
Genome-Wide CRISPR-Cas9 Screens Expose Genetic Vulnerabilities and Mechanisms of Temozolomide Sensitivity in Glioblastoma Stem Cells
Graham MacLeod et al.
CELL REPORTS (2019)
Comprehensive Integration of Single-Cell Data
Tim Stuart et al.
CELL (2019)
An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma
Cyril Neftel et al.
CELL (2019)
Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity
Joshua D. Welch et al.
CELL (2019)
The Phenotypes of Proliferating Glioblastoma Cells Reside on a Single Axis of Variation
Lin Wang et al.
CANCER DISCOVERY (2019)
Functional Enhancers Shape Extrachromosomal Oncogene Amplifications
Andrew R. Morton et al.
CELL (2019)
Longitudinal molecular trajectories of diffuse glioma in adults
Floris P. Barthel et al.
NATURE (2019)
Circular ecDNA promotes accessible chromatin and high oncogene expression
Sihan Wu et al.
NATURE (2019)
Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells
Irene Hernando-Herraez et al.
NATURE COMMUNICATIONS (2019)
Dimensionality reduction for visualizing single-cell data using UMAP
Etienne Becht et al.
NATURE BIOTECHNOLOGY (2019)
Multi-omics profiling of mouse gastrulation at single-cell resolution
Ricard Argelaguet et al.
NATURE (2019)
Exploring the landscape of focal amplifications in cancer using AmpliconArchitect
Viraj Deshpande et al.
NATURE COMMUNICATIONS (2019)
The broken cycle: E2F dysfunction in cancer
Lindsey N. Kent et al.
NATURE REVIEWS CANCER (2019)
Extrachromosomal oncogene amplification in tumour pathogenesis and evolution
Roel G. W. Verhaak et al.
NATURE REVIEWS CANCER (2019)
From Louvain to Leiden: guaranteeing well-connected communities
V. A. Traag et al.
SCIENTIFIC REPORTS (2019)
Snakemake-a scalable bioinformatics workflow engine (vol 28, pg 2520, 2012)
Johannes Koster et al.
BIOINFORMATICS (2018)
DNA methylation-based classification of central nervous system tumours
David Capper et al.
NATURE (2018)
Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma
Ana C. deCarvalho et al.
NATURE GENETICS (2018)
A Distinct DNA Methylation Shift in a Subset of Glioma CpG Island Methylator Phenotypes during Tumor Recurrence
Camila Ferreira de Souza et al.
CELL REPORTS (2018)
MutationalPatterns: comprehensive genome-wide analysis of mutational processes
Francis Blokzijl et al.
GENOME MEDICINE (2018)
The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space
Johanna Klughammer et al.
NATURE MEDICINE (2018)
Pan-cancer deconvolution of tumour composition using DNA methylation
Ankur Chakravarthy et al.
NATURE COMMUNICATIONS (2018)
Single-cell transcriptome analysis of lineage diversity in high-grade glioma
Jinzhou Yuan et al.
GENOME MEDICINE (2018)
High-Resolution Single-Cell DNA Methylation Measurements Reveal Epigenetically Distinct Hematopoietic Stem Cell Subpopulations
Tony Hui et al.
STEM CELL REPORTS (2018)
Single-cell multiomics sequencing and analyses of human colorectal cancer
Shuhui Bian et al.
SCIENCE (2018)
Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
Marlon Stoeckius et al.
GENOME BIOLOGY (2018)
Ensembl variation resources
Sarah E. Hunt et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2018)
SCANPY: large-scale single-cell gene expression data analysis
F. Alexander Wolf et al.
GENOME BIOLOGY (2018)
Rare cell variability and drug- induced reprogramming as a mode of cancer drug resistance
Sydney M. Shaffer et al.
NATURE (2017)
Targeting glioma stem cells through combined BMI1 and EZH2 inhibition
Xun Jin et al.
NATURE MEDICINE (2017)
SCENIC: single-cell regulatory network inference and clustering
Sara Aibar et al.
NATURE METHODS (2017)
Epigenetic plasticity and the hallmarks of cancer
William A. Flavahan et al.
SCIENCE (2017)
Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq
Andrew S. Venteicher et al.
SCIENCE (2017)
Single-cell epigenomics: Recording the past and predicting the future
Gavin Kelsey et al.
SCIENCE (2017)
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yimeng Yin et al.
SCIENCE (2017)
Tumor Evolution of Glioma-Intrinsic Gene Expression Subtypes Associates with Immunological Changes in the Microenvironment
Qianghu Wang et al.
CANCER CELL (2017)
Adaptive Chromatin Remodeling Drives Glioblastoma Stem Cell Plasticity and Drug Tolerance
Brian B. Liau et al.
CELL STEM CELL (2017)
LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
Nathan C. Sheffield et al.
BIOINFORMATICS (2016)
The 2016 World Health Organization Classification of Tumors of the Central Nervous System: a summary
David N. Louis et al.
ACTA NEUROPATHOLOGICA (2016)
Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma
Michele Ceccarelli et al.
CELL (2016)
DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation
Matthias Farlik et al.
CELL STEM CELL (2016)
Tumour hypoxia causes DNA hyper-methylation by reducing TET activity
Bernard Thienpont et al.
NATURE (2016)
Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
Itay Tirosh et al.
NATURE (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
Christof Angermueller et al.
NATURE METHODS (2016)
5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients
Kevin C. Johnson et al.
NATURE COMMUNICATIONS (2016)
dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
Tal Galili
BIOINFORMATICS (2015)
DNA Methylation and Somatic Mutations Converge on the Cell Cycle and Define Similar Evolutionary Histories in Brain Tumors
Tali Mazor et al.
CANCER CELL (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
Spatial reconstruction of single-cell gene expression data
Rahul Satija et al.
NATURE BIOTECHNOLOGY (2015)
Interactive analysis and assessment of single-cell copy-number variations
Tyler Garvin et al.
NATURE METHODS (2015)
Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing
Hongshan Guo et al.
NATURE PROTOCOLS (2015)
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas
Daniel J. Brat et al.
NEW ENGLAND JOURNAL OF MEDICINE (2015)
PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors
Amit G. Deshwar et al.
GENOME BIOLOGY (2015)
Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data
F. Favero et al.
ANNALS OF ONCOLOGY (2015)
Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser
Brian J. Raney et al.
BIOINFORMATICS (2014)
Locally Disordered Methylation Forms the Basis of Intratumor Methylome Variation in Chronic Lymphocytic Leukemia
Dan A. Landau et al.
CANCER CELL (2014)
TITAN: inference of copy number architectures, in clonal cell populations from tumor whole-genome sequence data
Gavin Ha et al.
GENOME RESEARCH (2014)
Cancer Epigenetics: Tumor Heterogeneity, Plasticity of Stem-like States, and Drug Resistance
Hariharan Easwaran et al.
MOLECULAR CELL (2014)
A promoter-level mammalian expression atlas
Alistair R. R. Forrest et al.
NATURE (2014)
GSVA: gene set variation analysis for microarray and RNA-Seq data
Sonja Haenzelmann et al.
BMC BIOINFORMATICS (2013)
Mesenchymal Differentiation Mediated by NF-κB Promotes Radiation Resistance in Glioblastoma
Krishna P. L. Bhat et al.
CANCER CELL (2013)
The CpG Island Methylator Phenotype: What's in a Name?
Laura A. E. Hughes et al.
CANCER RESEARCH (2013)
What a difference a hydroxyl makes: mutant IDH, (R)-2-hydroxyglutarate, and cancer
Julie-Aurore Losman et al.
GENES & DEVELOPMENT (2013)
Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing
Hongshan Guo et al.
GENOME RESEARCH (2013)
Mutational heterogeneity in cancer and the search for new cancer-associated genes
Michael S. Lawrence et al.
NATURE (2013)
Differential Relationship of DNA Replication Timing to Different Forms of Human Mutation and Variation
Amnon Koren et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2012)
IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype
Sevin Turcan et al.
NATURE (2012)
Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues
Gilad Landan et al.
NATURE GENETICS (2012)
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Felix Krueger et al.
BIOINFORMATICS (2011)
Identification of functional TFAP2A and SP1 binding sites in new TFAP2A-modulated genes
Francesca Orso et al.
BMC GENOMICS (2010)
Hypoxia inducible factors in cancer stem cells
J. M. Heddleston et al.
BRITISH JOURNAL OF CANCER (2010)
Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma
Houtan Noushmehr et al.
CANCER CELL (2010)
A Chromatin-Mediated Reversible Drug-Tolerant State in Cancer Cell Subpopulations
Sreenath V. Sharma et al.
CELL (2010)
Hypoxia-Inducible Factors Regulate Tumorigenic Capacity of Glioma Stem Cells
Zhizhong Li et al.
CANCER CELL (2009)
Cancer-associated IDH1 mutations produce 2-hydroxyglutarate
Lenny Dang et al.
NATURE (2009)
分享论文
