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Ivica Letunic et al.
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Epigenetic Variability Among Saffron Crocus (Crocus sativus L.) Accessions Characterized by Different Phenotypes
Matteo Busconi et al.
FRONTIERS IN PLANT SCIENCE (2021)
Deciphering genetic diversity analysis of saffron (Crocus sativus L.) using RAPD and ISSR markers
Mudasir A. Mir et al.
SAUDI JOURNAL OF BIOLOGICAL SCIENCES (2021)
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Petr Danecek et al.
GIGASCIENCE (2021)
Transcriptomic analysis of saffron at different flowering stages using RNA sequencing uncovers cytochrome P450 genes involved in crocin biosynthesis
Guangchun Gao et al.
MOLECULAR BIOLOGY REPORTS (2021)
Phytochemical Differentiation of Saffron (Crocus sativus L.) by High Resolution Mass Spectrometry Metabolomic Studies
Evangelos Gikas et al.
MOLECULES (2021)
A New Glycosyltransferase Enzyme from Family 91, UGT91P3, Is Responsible for the Final Glucosylation Step of Crocins in Saffron (Crocus sativus L.)
Alberto Jose Lopez-jimenez et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)
Saffron: A potential drug-supplement for severe acute respiratory syndrome coronavirus (COVID) management
Amjad M. Husaini et al.
HELIYON (2021)
MEGA11 Molecular Evolutionary Genetics Analysis Version 11
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Differential interaction of Or proteins with the PSY enzymes in saffron
Oussama Ahrazem et al.
SCIENTIFIC REPORTS (2020)
Re-epithelialization and immune cell behaviour in an ex vivo human skin model
Ana Rakita et al.
SCIENTIFIC REPORTS (2020)
Flower cultivation regimes affect apocarotenoid accumulation and gene expression during the development of saffron stigma
Guifen Zhou et al.
HORTICULTURE ENVIRONMENT AND BIOTECHNOLOGY (2020)
Full-length transcriptome sequencing provides insights into the evolution of apocarotenoid biosynthesis in Crocus sativus
Junyang Yue et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
Transcriptogramer: an R/Bioconductor package for transcriptional analysis based on protein-protein interaction
Diego A. A. Morais et al.
BIOINFORMATICS (2019)
Adding color to a century-old enigma: multi-color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus cartwrightianus cytotypes
Thomas Schmidt et al.
NEW PHYTOLOGIST (2019)
Challenges in the Integration of Omics and Non-Omics Data
Evangelina Lopez de Maturana et al.
GENES (2019)
Multi-species transcriptome analyses for the regulation of crocins biosynthesis in Crocus
Oussama Ahrazem et al.
BMC GENOMICS (2019)
Transcriptome analysis reveals novel enzymes for apo-carotenoid biosynthesis in saffron and allows construction of a pathway for crocetin synthesis in yeast
Hexin Tan et al.
JOURNAL OF EXPERIMENTAL BOTANY (2019)
UGT709G1: a novel uridine diphosphate glycosyltransferase involved in the biosynthesis of picrocrocin, the precursor of safranal in saffron (Crocus sativus)
Gianfranco Diretto et al.
NEW PHYTOLOGIST (2019)
Discrimination of Different Parts of Saffron by Metabolomic-Based Ultra-Performance Liquid Chromatography Coupled with High-Definition Mass Spectrometry
Shuya Xu et al.
CHEMISTRY & BIODIVERSITY (2019)
Single-molecule real-time transcript sequencing identified flowering regulatory genes in Crocus sativus
Xiaodong Qian et al.
BMC GENOMICS (2019)
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Yasset Perez-Riverol et al.
NUCLEIC ACIDS RESEARCH (2019)
Temporal expression of floral proteins interacting with CArG1 region of CsAP3 gene in Crocus sativus L.
Asrar H. Wafai et al.
GENE REPORTS (2019)
MORPHOLOGICAL AND MOLECULAR CHARACTERIZATION OF ITALIAN, IRANIAN AND SPANISH SAFFRON (CROCUS SATIVUS L.) ACCESSIONS
R. Torricelli et al.
APPLIED ECOLOGY AND ENVIRONMENTAL RESEARCH (2019)
A comparative assessment of DNA fingerprinting assays of ISSR and RAPD markers for molecular diversity of Saffron and other Crocus spp. in Iran
Hamid Najafi Zarini et al.
NUCLEUS-INDIA (2019)
Quantitative HPLC-based metabolomics of some Iranian saffron (Crocus sativus L.) accessions
Maryam Vahedi et al.
INDUSTRIAL CROPS AND PRODUCTS (2018)
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
Lukas Zimmermann et al.
JOURNAL OF MOLECULAR BIOLOGY (2018)
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Multiplex Fluorescent, Activity-Based Protein Profiling Identifies Active α-Glycosidases and Other Hydrolases in Plants
Amjad M. Husaini et al.
PLANT PHYSIOLOGY (2018)
Transcriptome analysis in tissue sectors with contrasting crocins accumulation provides novel insights into apocarotenoid biosynthesis and regulation during chromoplast biogenesis
Oussama Ahrazem et al.
SCIENTIFIC REPORTS (2018)
Epigenetic stability in Saffron (Crocus sativus L.) accessions during four consecutive years of cultivation and vegetative propagation under open field conditions
Matteo Busconi et al.
PLANT SCIENCE (2018)
Unraveling Massive Crocins Transport and Accumulation through Proteome and Microscopy Tools during the Development of Saffron Stigma
Lourdes Gomez-Gomez et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
Julio Rozas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Metabolic shift in sugars and amino acids regulates sprouting in Saffron corm
Jayram Bagri et al.
SCIENTIFIC REPORTS (2017)
Proteomic analysis of saffron (Crocus sativus L.) grown under conditions of cadmium toxicity
Junfeng Rao et al.
Bioscience Journal (2017)
MISA-web: a web server for microsatellite prediction
Sebastian Beier et al.
BIOINFORMATICS (2017)
The causes and consequences of DNA methylome variation in plants
Danelle K. Seymour et al.
CURRENT OPINION IN PLANT BIOLOGY (2017)
KEGG as a reference resource for gene and protein annotation
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
On the Traceability of Commercial Saffron Samples Using 1H-NMR and FT-IR Metabolomics
Roberto Consonni et al.
MOLECULES (2016)
The Perseus computational platform for comprehensive analysis of (prote)omics data
Stefka Tyanova et al.
NATURE METHODS (2016)
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
Stefka Tyanova et al.
NATURE PROTOCOLS (2016)
The Increasing Impact of Activity-Based Protein Profiling in Plant Science
Kyoko Morimoto et al.
PLANT AND CELL PHYSIOLOGY (2016)
Comparative Metagenomics Reveal Phylum Level Temporal and Spatial Changes in Mycobiome of Belowground Parts of Crocus sativus
Sheetal Ambardar et al.
PLOS ONE (2016)
De novo transcriptome assembly and comprehensive expression profiling in Crocus sativus to gain insights into apocarotenoid biosynthesis
Mukesh Jain et al.
SCIENTIFIC REPORTS (2016)
A survey of best practices for RNA-seq data analysis
Ana Conesa et al.
GENOME BIOLOGY (2016)
Metabolomic fingerprinting of saffron by LC/MS: novel authenticity markers
Miguel Guijarro-Diez et al.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2015)
Diversity and relationships of Crocus sativus and its relatives analysed by inter-retroelement amplified polymorphism (IRAP)
Nouf Fakieh Alsayied et al.
ANNALS OF BOTANY (2015)
Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis
Shoib Ahmad Baba et al.
BMC GENOMICS (2015)
Evaluation of saffron (Crocus sativus L.) adulteration with plant adulterants by 1H NMR metabolite fingerprinting
Eleftherios A. Petrakis et al.
FOOD CHEMISTRY (2015)
NMR investigations for a quality assessment of Italian PDO saffron (Crocus sativus L.)
Laura R. Cagliani et al.
FOOD CONTROL (2015)
1H NMR-based metabolomics of saffron reveals markers for its quality deterioration
Stella A. Ordoudi et al.
FOOD RESEARCH INTERNATIONAL (2015)
Identification of protein coding regions in RNA transcripts
Shiyuyun Tang et al.
NUCLEIC ACIDS RESEARCH (2015)
Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability
Anil Kumar et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2015)
AFLP and MS-AFLP Analysis of the Variation within Saffron Crocus (Crocus sativus L.) Germplasm
Matteo Busconi et al.
PLOS ONE (2015)
Structural characterization of highly glucosylated crocins and regulation of their biosynthesis during flower development in Crocus
Oussama Ahrazem et al.
FRONTIERS IN PLANT SCIENCE (2015)
Comparative expression analysis of senescence gene CsNAP and B-class floral development gene CsAP3 during different stages of flower development in Saffron (Crocus sativus L.)
Asrar H. Wafai et al.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2015)
PacBio Sequencing and Its Applications
Anthony Rhoads et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2015)
Large intraspecific genetic variation within the Saffron-Crocus group (Crocus L., Series Crocus; Iridaceae)
Bjarne Larsen et al.
PLANT SYSTEMATICS AND EVOLUTION (2015)
Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesis
Sarah Frusciante et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Challenges of climate change
Amjad M Husaini
GM Crops & Food-Biotechnology in Agriculture and the Food Chain (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool
Xinbin Dai et al.
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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
PIECE: a database for plant gene structure comparison and evolution
Yi Wang et al.
NUCLEIC ACIDS RESEARCH (2013)
ISOLATION AND CHARACTERIZATION OF A FIRST SET OF POLYMORPHIC MICROSATELLITE MARKERS IN SAFFRON, CROCUS SATIVUS (IRIDACEAE)
Zahra Nemati et al.
AMERICAN JOURNAL OF BOTANY (2012)
COMPUTATIONAL IDENTIFICATION OF miRNAs AND THEIR TARGETS FROM CROCUS SATIVUS L.
Praveen Guleria et al.
ARCHIVES OF BIOLOGICAL SCIENCES (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Davis J. McCarthy et al.
NUCLEIC ACIDS RESEARCH (2012)
Identification of differentially accumulated proteins associated with embryogenic and non-embryogenic calli in saffron (Crocus sativus L.)
Golandam Sharifi et al.
PROTEOME SCIENCE (2012)
Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data
Fernando Garcia-Alcalde et al.
BIOINFORMATICS (2011)
Triterpenoid saponins from corms of Crocus sativus: Localization, extraction and characterization
Angela Rubio-Moraga et al.
INDUSTRIAL CROPS AND PRODUCTS (2011)
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
psRNATarget: a plant small RNA target analysis server
Xinbin Dai et al.
NUCLEIC ACIDS RESEARCH (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Intersimple sequence repeat markers for molecular characterization of Crocus cartwrightianus cv. albus
Angela Rubio Moraga et al.
INDUSTRIAL CROPS AND PRODUCTS (2010)
The expression of a chromoplast-specific lycopene beta cyclase gene is involved in the high production of saffron's apocarotenoid precursors
Oussama Ahrazem et al.
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Cole Trapnell et al.
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PInTFDB: updated content and new features of the plant transcription factor database
Paulino Perez-Rodriguez et al.
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TrichOME: A Comparative Omics Database for Plant Trichomes
Xinbin Dai et al.
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Metabolite and target transcript analyses during Crocus sativus stigma development
Angela Rubio Moraga et al.
PHYTOCHEMISTRY (2009)
How Many Loci Does it Take to DNA Barcode a Crocus?
Ole Seberg et al.
PLOS ONE (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Analysis of genetic diversity and phylogenetic relationships in Crocus genus of Iran using inter-retrotransposon amplified polymorphism
S. S. Alavi-Kia et al.
BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT (2008)
PlantGDB: a resource for comparative plant genomics
Jon Duvick et al.
NUCLEIC ACIDS RESEARCH (2008)
An EST database from saffron stigmas
Nunzio D'Agostino et al.
BMC PLANT BIOLOGY (2007)
PlnTFDB:: an integrative plant transcription factor database
Diego Mauricio Riano-Pachon et al.
BMC BIOINFORMATICS (2007)
A new approach to saffron aroma
M. Carmona et al.
CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2007)
WEGO: a web tool for plotting GO annotations
Jia Ye et al.
NUCLEIC ACIDS RESEARCH (2006)
GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research
R Peakall et al.
MOLECULAR ECOLOGY NOTES (2006)
Embryo origin and development in Crocus sativus L. (Iridaceae)
MG Caiola
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Implications of carotenoid biosynthetic genes in apocarotenoid formation during the stigma development of Crocus sativus and its closer relatives
R Castillo et al.
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Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research
A Conesa et al.
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KaPPA-View. A web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps
T Tokimatsu et al.
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GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms
PG Meirmans et al.
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The KEGG resource for deciphering the genome
M Kanehisa et al.
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RAPD analysis in Crocus sativus L. accessions and related Crocus species
MG Caiola et al.
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