相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe
Xinyi Guo et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Polyploid phylogenetics
Carl J. Rothfels
NEW PHYTOLOGIST (2021)
Chloroplast phylogenomic insights into the evolution of Distylium (Hamamelidaceae)
Wenpan Dong et al.
BMC GENOMICS (2021)
Evolutionary origin of species diversity on the Qinghai-Tibet Plateau
Kang-Shan Mao et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2021)
Plastome-based phylogenomics elucidate relationships in rare Isoetes species groups from the Neotropics
Jovani B. S. Pereira et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2021)
Phylogenomics of the genus Populus reveals extensive interspecific gene flow and balancing selection
Mingcheng Wang et al.
NEW PHYTOLOGIST (2020)
Polyploidy promotes species diversification of Allium through ecological shifts
Ting-Shen Han et al.
NEW PHYTOLOGIST (2020)
Polyploidy in gymnosperms - Insights into the genomic and evolutionary consequences of polyploidy in Ephedra
Stefanie M. Ickert-Bond et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2020)
Large-scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near-simultaneous evolutionary origin of all six subfamilies
Erik J. M. Koenen et al.
NEW PHYTOLOGIST (2020)
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy
Chao Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus)
Julie A. Lee-Yaw et al.
NEW PHYTOLOGIST (2019)
Small, but surprisingly repetitive genomes: transposon expansion and not polyploidy has driven a doubling in genome size in a metazoan species complex
J. Blommaert et al.
BMC GENOMICS (2019)
Genomic insight into sky island species diversification in a mountainous biodiversity hotspot
Dan Zhang et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2019)
Interaction among ploidy, breeding system and lineage diversification
Rosana Zenil-Ferguson et al.
NEW PHYTOLOGIST (2019)
Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot
Jia-hui Chen et al.
NATURE COMMUNICATIONS (2019)
Trans-lineage polymorphism and nonbifurcating diversification of the genus Picea
Shuo Feng et al.
NEW PHYTOLOGIST (2019)
Phylogeny, origin and dispersal of Saussurea (Asteraceae) based on chloroplast genome data
Lian-Sheng Xu et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)
Evolutionary radiations of cushion plants on the Qinghai-Tibet Plateau: Insights from molecular phylogenetic analysis of two subgenera of Arenaria and Thylacospermum (Caryophyllaceae)
Bo Xu et al.
TAXON (2019)
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Diep Thi Hoang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
Robert M. Waterhouse et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Rapid hybrid speciation in Darwin's finches
Sangeet Lamichhaney et al.
SCIENCE (2018)
Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data
Dingqiao Wen et al.
SYSTEMATIC BIOLOGY (2018)
Impact of whole-genome duplication events on diversification rates in angiosperms
Jacob B. Landis et al.
AMERICAN JOURNAL OF BOTANY (2018)
The genomes of two Eutrema species provide insight into plant adaptation to high altitudes
Xinyi Guo et al.
DNA RESEARCH (2018)
Shifts in plant distributions in response to climate warming in a biodiversity hotspot, the Hengduan Mountains
Qianlong Liang et al.
JOURNAL OF BIOGEOGRAPHY (2018)
Demographic expansion and genetic load of the halophyte model plant Eutrema salsugineum
Xiao-Juan Wang et al.
MOLECULAR ECOLOGY (2018)
Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
Diego F. Morales-Briones et al.
NEW PHYTOLOGIST (2018)
Genome Size Diversity and Its Impact on the Evolution of Land Plants
Jaume Pellicer et al.
GENES (2018)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium)
Oscar M. Vargas et al.
NEW PHYTOLOGIST (2017)
Eutrema giganteum (Brassicaceae), a new species from Sichuan, southwest China
Guoqian Hao et al.
PHYTOKEYS (2017)
An integrative study of evolutionary diversification of Eutrema (Eutremeae, Brassicaceae)
Guoqian Hao et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2017)
Plastome phylogeny and early diversification of Brassicaceae
Xinyi Guo et al.
BMC GENOMICS (2017)
Using genomic repeats for phylogenomics: a case study in wild tomatoes (Solanum section Lycopersicon: Solanaceae)
Steven Dodsworth et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2016)
Phytochemical profiling of five medicinally active constituents across 14 Eutrema species
Guoqian Hao et al.
FITOTERAPIA (2016)
Whole-genome duplication as a key factor in crop domestication
Ayelet Salman-Minkov et al.
NATURE PLANTS (2016)
Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads
S. Evan Staton et al.
BIOINFORMATICS (2015)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Polyploidy and genome evolution in plants
Pamela S. Soltis et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2015)
Eutrema racemosum (Eutremeae, Brassicaceae), a new tetraploid species from southwest China
Guoqian Hao et al.
PHYTOTAXA (2015)
The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas
Adrien Favre et al.
BIOLOGICAL REVIEWS (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Genomic Repeat Abundances Contain Phylogenetic Signal
Steven Dodsworth et al.
SYSTEMATIC BIOLOGY (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Sky islands of southwest China. I: an overview of phylogeographic patterns
Kai He et al.
CHINESE SCIENCE BULLETIN (2014)
Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
Ya Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Rapid radiation and dispersal out of the Qinghai-Tibetan Plateau of an alpine plant lineage Rhodiola (Crassulaceae)
Jian-Qiang Zhang et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)
NextGenMap: fast and accurate read mapping in highly polymorphic genomes
Fritz J. Sedlazeck et al.
BIOINFORMATICS (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
The Norway spruce genome sequence and conifer genome evolution
Bjorn Nystedt et al.
NATURE (2013)
Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa
Feng Cheng et al.
PLANT CELL (2013)
The More the Merrier: Recent Hybridization and Polyploidy in Cardamine
Terezie Mandakova et al.
PLANT CELL (2013)
Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences
Simon Renny-Byfield et al.
PLANT JOURNAL (2013)
What controlled Mid-Late Miocene long-term aridification in Central Asia? - Global cooling or Tibetan Plateau uplift: A review
Yunfa Miao et al.
EARTH-SCIENCE REVIEWS (2012)
Insights into salt tolerance from the genome of Thellungiella salsuginea
Hua-Jun Wu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
The genome of the extremophile crucifer Thellungiella parvula
Maheshi Dassanayake et al.
NATURE GENETICS (2011)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
The frequency of polyploid speciation in vascular plants
Troy E. Wood et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
BLAST: at the core of a powerful and diverse set of sequence analysis tools
S McGinnis et al.
NUCLEIC ACIDS RESEARCH (2004)
Origin of the Miocene-Pliocene Red-Earth formation at Xifeng in northern China and implications for paleoenvironments
ZT Guo et al.
PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY (2001)
分享论文
