4.7 Article

Structural specificity of groove binding mechanism between imidazolium-based ionic liquids and DNA revealed by synchrotron-UV Resonance Raman spectroscopy and molecular dynamics simulations

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Chemistry, Physical

Base-specific pre-melting and melting transitions of DNA in presence of ionic liquids probed by synchrotron-based UV resonance Raman scattering

Cettina Bottari et al.

Summary: Hydrated ionic liquids (ILs) have been found to enhance the structural stability of DNA. The cations and anions of ILs strongly interact with the DNA structure, affecting the melting process but not perturbing the pre-melting transition. The dominant interaction occurs between the imidazolium cation and the guanine and thymine bases in DNA structure.

JOURNAL OF MOLECULAR LIQUIDS (2021)

Article Biochemistry & Molecular Biology

Ionic liquids: prospects for nucleic acid handling and delivery

Ksenia S. Egorova et al.

Summary: Operations with nucleic acids play a crucial role in studying gene function mechanisms and developing molecular medicine and gene therapy. Recently, the use of ionic liquids in manipulating nucleic acids has gained significant attention due to their unique physicochemical properties, offering potential advantages in the field.

NUCLEIC ACIDS RESEARCH (2021)

Review Pharmacology & Pharmacy

DNA-GEL, Novel Nanomaterial for Biomedical Applications and Delivery of Bioactive Molecules

Enrico Lattuada et al.

FRONTIERS IN PHARMACOLOGY (2020)

Review Chemistry, Multidisciplinary

Use of Ionic Liquids in Protein and DNA Chemistry

Shashi Kant Shukla et al.

FRONTIERS IN CHEMISTRY (2020)

Article Chemistry, Physical

Polymorphism of human telomeric quadruplexes with drugs: a multi-technique biophysical study

L. Comez et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2020)

Article Biochemical Research Methods

Extraction of DNA with magnetic ionic liquids using in situ dispersive liquid-liquid microextraction

Ashley N. Bowers et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2019)

Article Chemistry, Physical

A Molecular Dynamics-Quantum Mechanics Theoretical Study of DNA-Mediated Charge Transport in Hydrated Ionic Liquids

Zhenyu Meng et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2018)

Article Chemistry, Physical

Ionic liquids make DNA rigid

Ashok Garai et al.

JOURNAL OF CHEMICAL PHYSICS (2018)

Article Biochemistry & Molecular Biology

Structure of human telomere G-quadruplex in the presence of a model drug along the thermal unfolding pathway

Federico Bianchi et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Chemistry, Multidisciplinary

Biological Activity of Ionic Liquids and Their Application in Pharmaceutics and Medicine

Ksenia S. Egorova et al.

CHEMICAL REVIEWS (2017)

Article Chemistry, Multidisciplinary

Room Temperature Ionic Liquids Meet Biomolecules: A Microscopic View of Structure and Dynamics

Antonio Benedetto et al.

ACS SUSTAINABLE CHEMISTRY & ENGINEERING (2016)

Article Chemistry, Multidisciplinary

Nanoscale Structure and Elasticity of Pillared DNA Nanotubes

Himanshu Joshi et al.

ACS NANO (2016)

Review Biochemical Research Methods

Recent advances in exploiting ionic liquids for biomolecules: Solubility, stability and applications

Magaret Sivapragasam et al.

BIOTECHNOLOGY JOURNAL (2016)

Review Biochemical Research Methods

Recent advances in exploiting ionic liquids for biomolecules: Solubility, stability and applications

Magaret Sivapragasam et al.

BIOTECHNOLOGY JOURNAL (2016)

Article Chemistry, Physical

Spectroscopic and Molecular Docking Study of the Interaction of DNA with a Morpholinium Ionic Liquid

Ashok Pabbathi et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2015)

Review Biotechnology & Applied Microbiology

DNA stability in ionic liquids and deep eutectic solvents

Hua Zhao

JOURNAL OF CHEMICAL TECHNOLOGY AND BIOTECHNOLOGY (2015)

Article Biochemistry & Molecular Biology

Structure, stability and behaviour of nucleic acids in ionic liquids

Hisae Tateishi-Karimata et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemical Research Methods

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

Sander Pronk et al.

BIOINFORMATICS (2013)

Article Chemistry, Physical

Probing the DNA-ionic liquid interaction using an ultrafast molecular rotor

Prabhat K. Singh et al.

JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY (2012)

Article Chemistry, Multidisciplinary

Groove Binding Mechanism of Ionic Liquids: A Key Factor in Long-Term Stability of DNA in Hydrated Ionic Liquids?

Aneesh Chandran et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)

Editorial Material Chemistry, Physical

DNA Molecular Solvation in Neat Ionic Liquids

Lena Cardoso et al.

CHEMPHYSCHEM (2011)

Article Multidisciplinary Sciences

Nanoparticle Superlattice Engineering with DNA

Robert J. Macfarlane et al.

SCIENCE (2011)

Article Chemistry, Multidisciplinary

Long-Term Structural and Chemical Stability of DNA in Hydrated Ionic Liquids

Ranganathan Vijayaraghavan et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2010)

Article Chemistry, Physical

Binding Characteristics and Molecular Mechanism of Interaction between Ionic Liquid and DNA

Yuanhua Ding et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2010)

Article Chemistry, Multidisciplinary

PACKMOL: A Package for Building Initial Configurations for Molecular Dynamics Simulations

L. Martinez et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)

Article Multidisciplinary Sciences

From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal

Jianping Zheng et al.

NATURE (2009)

Article Chemistry, Physical

GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation

Berk Hess et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)

Article Chemistry, Physical

Aqueous solutions of ionic liquids: study of the solution/vapor interface using molecular dynamics simulations

Jan Picalek et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2008)

Article Chemistry, Multidisciplinary

Ionic liquids:: First direct determination of their cohesive energy

Luis M. N. B. F. Santos et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Chemistry, Physical

Canonical sampling through velocity rescaling

Giovanni Bussi et al.

JOURNAL OF CHEMICAL PHYSICS (2007)

Review Chemistry, Multidisciplinary

GROMACS: Fast, flexible, and free

D Van der Spoel et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)

Article Biochemistry & Molecular Biology

DNA-responsive hydrogels that can shrink or swell

Y Murakami et al.

BIOMACROMOLECULES (2005)

Review Pharmacology & Pharmacy

DNA-based therapeutics and DNA delivery systems: A comprehensive review

SD Patil et al.

AAPS JOURNAL (2005)

Article Biochemistry & Molecular Biology

A gene-specific DNA sequencing chip for exploring molecular evolutionary change

O Fedrigo et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Microbiology

Strengths and limitations of commercial tests for hepatitis C virus RNA quantification

C Morishima et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2004)

Article Multidisciplinary Sciences

Ion motions in molecular dynamics simulations on DNA

SY Ponomarev et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Chemistry, Multidisciplinary

Packing optimization for automated generation of complex system's initial configurations for molecular dynamics and docking

JM Martínez et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2003)

Article Chemistry, Multidisciplinary

Ionic liquids. Green solvents for the future

MJ Earle et al.

PURE AND APPLIED CHEMISTRY (2000)