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Fragment-to-Lead Medicinal Chemistry Publications in 2020

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Fragment-based drug design facilitates selective kinase inhibitor

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C-H functionalisation tolerant to polar groups could transform fragment-based drug discovery (FBDD)

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Summary: This study analyzed 131 fragment-to-lead examples targeting various protein families between 2015-2019, identifying the most common polar functional groups involved in fragment-protein binding and highlighting the key role of growth from carbocentric vectors. The results suggest that robust C-H functionalisation methods that tolerate the polar functionality on fragments could be transformative for fragment-based drug discovery.

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Fragment-based drug discovery: opportunities for organic synthesis

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The 3F Library: Fluorinated Fsp3-Rich Fragments for Expeditious 19F NMR Based Screening

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Fragments: where are we now?

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Fragment-based drug discovery using cryo-EM

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Discovery of Potent, Reversible, and Competitive Cruzain Inhibitors with Trypanocidal Activity: A Structure-Based Drug Design Approach

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FragPELE: Dynamic Ligand Growing within a Binding Site. A Novel Tool for Hit-To-Lead Drug Design

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Developing Inhibitors of the p47phox-p22phox Protein-Protein Interaction by Fragment-Based Drug Discovery

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Stepwise Evolution of Fragment Hits against MAPK Interacting Kinases 1 and 2

Jacek Kwiatkowski et al.

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Selective inhibition of the BD2 bromodomain of BET proteins in prostate cancer

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Covalent-Fragment Screening of BRD4 Identifies a Ligandable Site Orthogonal to the Acetyl-Lysine Binding Sites

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Comprehensive and High-Throughput Exploration of Chemical Space Using Broadband19F NMR-Based Screening

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Target-Directed Azide-Alkyne Cycloaddition for Assembling HIV-1 TAR RNA Binding Ligands

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A novel potent metal-binding NDM-1 inhibitor was identified by fragment virtual, SPR and NMR screening

Huifang Guo et al.

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Design and Synthesis of 56 Shape-Diverse 3D Fragments

Thomas D. Downes et al.

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Covalent fragment libraries in drug discovery

Aaron Keeley et al.

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Discovery of the first Mycobacterium tuberculosis MabA (FabG1) inhibitors through a fragment-based screening

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Targeting a critical step in fungal hexosamine biosynthesis

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Deep Generative Models for 3D Linker Design

Fergus Imrie et al.

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Discovery of WD Repeat-Containing Protein 5 (WDR5)-MYC Inhibitors Using Fragment-Based Methods and Structure-Based Design

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Fragment-Based Design of Mycobacterium tuberculosis InhA Inhibitors

Mohamad Sabbah et al.

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Fragment-Based Discovery of Pyrazolopyridones as JAK1 Inhibitors with Excellent Subtype Selectivity

Bettina Borreschmidt Hansen et al.

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Biophysical Screens Identify Fragments That Bind to the Viral DNA-Binding Proteins EBNA1 and LANA

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A Photoaffinity-Based Fragment-Screening Platform for Efficient Identification of Protein Ligands

Emma K. Grant et al.

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Design, synthesis and biological activity of novel substituted 3-benzoic acid derivatives as MtDHFR inhibitors

Thales Kronenberger et al.

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FragMAX: the fragment-screening platform at the MAX IV Laboratory

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CcpNmr AnalysisScreen, a new software programme with dedicated automated analysis tools for fragment-based drug discovery by NMR

Luca G. Mureddu et al.

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Visualizing drug binding interactions using microcrystal electron diffraction

Max T. B. Clabbers et al.

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Fragment Linking Strategies for Structure-Based Drug Design

Alexandre Bancet et al.

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Fragment-based Differential Targeting of PPI Stabilizer Interfaces

Xavier Guillory et al.

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Rapid Elaboration of Fragments into Leads by X-ray Crystallographic Screening of Parallel Chemical Libraries (REFiLx)

Matthew R. Bentley et al.

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Fragment-Based Stabilizers of Protein-Protein Interactions through Imine-Based Tethering

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Competition NMR for Detection of Hit/Lead Inhibitors of Protein-Protein Interactions

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Crowdsourcing drug discovery for pandemics

John Chodera et al.

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Fragment-based discovery of a new class of inhibitors targeting mycobacterial tRNA modification

Sherine E. Thomas et al.

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Assessment of the Fragment Docking Program SEED

Kenneth Goossens et al.

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Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors

Markus Schade et al.

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Covalent inhibition of NSD1 histone methyltransferase

Huang Huang et al.

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Many small steps towards a COVID-19 drug

Daniel A. Erlanson

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Crystallographic and electrophilic fragment screening of the SARS-CoV-2 main protease

Alice Douangamath et al.

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Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures

Lisa M. Baker et al.

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Fluorescence Anisotropy-Based Tethering for Discovery of Protein-Protein Interaction Stabilizers

Eline Sijbesma et al.

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Fragment-derived modulators of an industrial β-glucosidase

Eleni Makraki et al.

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Fragment-based lead discovery of a novel class of small molecule antagonists of neuropeptide B/W receptor subtype 1 (GPR7)

Remond Moningka et al.

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LEADS-FRAG: A Benchmark Data Set for Assessment of Fragment Docking Performance

Laura Chachulski et al.

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Benchmark Sets for Binding Hot Spot Identification in FragmentBased Ligand Discovery

Amanda E. Wakefield et al.

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Fragment-Based Discovery of Novel Non-Hydroxamate LpxC Inhibitors with Antibacterial Activity

Yousuke Yamada et al.

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Wolfgang Jahnke et al.

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A general fragment-based approach to identify and optimize bioactive ligands targeting RNA

Blessy M. Suresh et al.

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KinFragLib: Exploring the Kinase Inhibitor Space Using Subpocket-Focused Fragmentation and Recombination

Dominique Sydow et al.

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Discovery of a novel kinase hinge binder fragment by dynamic undocking

Moira Rachman et al.

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C(sp3)-H arylation to construct all-syncyclobutane-based heterobicyclic systems: a novel fragment collection

Thomas J. Osberger et al.

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Fsp3-rich and diverse fragments inspired by natural products as a collection to enhance fragment-based drug discovery

Abigail R. Hanby et al.

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Expanding medicinal chemistry into 3D space: metallofragments as 3D scaffolds for fragment based drug discovery

Christine N. Morrison et al.

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Site-Directed Fragment-Based Screening for the Discovery of Protein-Protein Interaction Stabilizers

Eline Sijbesma et al.

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Aminoquinoline-Rhodium(II) Conjugates as Src-Family SH3 Ligands

Samuel C. Martin et al.

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Fragment-to-Lead Medicinal Chemistry Publications in 2017

Paul N. Mortenson et al.

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Fragment-to-Lead Medicinal Chemistry Publications in 2016

Christopher N. Johnson et al.

JOURNAL OF MEDICINAL CHEMISTRY (2018)

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When fragments link: a bibliometric perspective on the development of fragment-based drug discovery

Angelo K. S. Romasanta et al.

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Fragment-to-Lead Medicinal Chemistry Publications in 2015

Christopher N. Johnson et al.

JOURNAL OF MEDICINAL CHEMISTRY (2017)

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Assessing the lipophilicity of fragments and early hits

Paul N. Mortenson et al.

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The rise of fragment-based drug discovery

Christopher W. Murray et al.

NATURE CHEMISTRY (2009)

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The influence of drug-like concepts on decision-making in medicinal chemistry

Paul D. Leeson et al.

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The identification of clinical candidate SB-480848:: A potent inhibitor of lipoprotein-associated phospholipase A2

JA Blackie et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2003)

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A new approach to finding natural chemical structure classes

J Xu

JOURNAL OF MEDICINAL CHEMISTRY (2002)